pygamma-agreement
pygamma-agreement: Gamma γ measure for inter/intra-annotator agreement in Python - Published in JOSS (2021)
Ipyannotator
Ipyannotator: the infinitely hackable annotation framework - Published in JOSS (2022)
MSMetaEnhancer
MSMetaEnhancer: A Python package for mass spectra metadata annotation - Published in JOSS (2022)
Magphi
Magphi: Sequence extraction tool from FASTA and GFF3 files using seed pairs - Published in JOSS (2022)
labelme
Image Polygonal Annotation with Python (polygon, rectangle, circle, line, point and image-level flag annotation).
cvat
Annotate better with CVAT, the industry-leading data engine for machine learning. Used and trusted by teams at any scale, for data of any scale.
labelImg
LabelImg is now part of the Label Studio community. The popular image annotation tool created by Tzutalin is no longer actively being developed, but you can check out Label Studio, the open source data labeling tool for images, text, hypertext, audio, video and time-series data.
https://github.com/bartongroup/proteofav
Open-source framework for simple and fast integration of protein structure data with sequence annotations and genetic variation
nf-platypusindelcalling
This page is reserved for NextFlow based Indell Calling Workflow (with Platypus) from DKFZ
sutd-trafficqa
[CVPR2021] SUTD-TrafficQA: A Question Answering Benchmark and an Efficient Network for Video Reasoning over Traffic Events
databaselinke.r
A set of functions to parse and open (search query) links to genomics related and other websites for R. Useful when you want to explore e.g.: the function of a set of differentially expressed genes.
https://github.com/hcmlab/nova
NOVA is a tool for annotating and analyzing behaviours in social interactions. It supports Annotators using Machine Learning already during the coding process. Further it features both, discrete labels and continuous scores and a visuzalization of streams recorded with the SSI Framework.
cytobrowser
CytoBrowser, a JavaScript and Node.js driven environment for fast and accessible collaborative online visualization, assessment, and annotation of very large microscopy images.
mother-db-annotation-tools
This repository contains code for the MOTHER-DB.org specifically related to image segmentation and annotation work flows. MOTHER-DB is a database, meta-data archive and set of programs for annotating and storing ovary histology images from a wide range of species.
https://github.com/bigbio/sdrf-cellline-metadata-db
SDRF Cell Line Metadata Database
