Projects | Open Source Science

Scientific Software

Updated 7 months ago

MLxtend — Peer-reviewed • Rank 26.9 • Science 95%

MLxtend: Providing machine learning and data science utilities and extensions to Python's scientific computing stack - Published in JOSS (2018)

association-rules data-mining data-science machine-learning python supervised-learning unsupervised-learning

Mathematics

Scientific Software · Peer-reviewed

Scientific Software

Updated 7 months ago

geocmeans — Peer-reviewed • Rank 9.8 • Science 93%

geocmeans: An R package for spatial fuzzy c-means - Published in JOSS (2023)

clustering cmeans fuzzy-classification-algorithms r spatial-analysis spatial-fuzzy-cmeans unsupervised-learning

Scientific Software · Peer-reviewed

Scientific Software

Updated 7 months ago

Persistable — Peer-reviewed • Rank 9.5 • Science 93%

Persistable: persistent and stable clustering - Published in JOSS (2023)

cluster-analysis clustering clustering-algorithm machine-learning machine-learning-algorithms topological-data-analysis unsupervised-learning

Mathematics

Scientific Software · Peer-reviewed

Scientific Software

Updated 7 months ago

ClassiPyGRB — Peer-reviewed • Rank 7.5 • Science 93%

ClassiPyGRB: Machine Learning-Based Classification and Visualization of Gamma Ray Bursts using t-SNE - Published in JOSS (2024)

astrophysics grbs machine-learning machine-learning-algorithms unsupervised-learning unsupervised-machine-learning

Mathematics

Scientific Software · Peer-reviewed

Updated 7 months ago

t-elf • Rank 5.5 • Science 85%

Tensor Extraction of Latent Features (T-ELF). Within T-ELF's arsenal are non-negative matrix and tensor factorization solutions, equipped with automatic model determination (also known as the estimation of latent factors - rank) for accurate data modeling. Our software suite encompasses cutting-edge data pre-processing and post-processing modules.

blind-source-separation dimensionality-reduction feature-extraction gpu high-performance-computing hpc latent-variables machine-learning matrix matrix-completion matrix-factorization non-negative-matrix-factorization pattern-extraction semi-supervised-learning tensor-decomposition tensor-factorization tensors text-preprocessing unsupervised-learning

Updated 7 months ago

alibi-detect • Rank 22.9 • Science 64%

Algorithms for outlier, adversarial and drift detection

adversarial anomaly concept-drift data-drift detection drift-detection images outlier semi-supervised-learning tabular-data text time-series unsupervised-learning

Updated 7 months ago

susi • Rank 5.8 • Science 77%

SuSi: Python package for unsupervised, supervised and semi-supervised self-organizing maps (SOM)

data-science machine-learning opensource pypi-package python self-organizing-map semi-supervised-learning som sphinx-doc supervised-learning unsupervised-learning

Updated 7 months ago

hyperspectral-regression • Rank 4.4 • Science 77%

Code examples for the book chapter "Supervised, Semi-Supervised and Unsupervised Learning for Hyperspectral Regression".

book-chapter hyperspectral python semi-supervised-learning supervised-learning unsupervised-learning

Updated 7 months ago

anomalib • Rank 23.1 • Science 54%

An anomaly detection library comprising state-of-the-art algorithms and features such as experiment management, hyper-parameter optimization, and edge inference.

anomaly-detection anomaly-localization anomaly-segmentation geti neural-network-compression openvino unsupervised-learning

Updated 7 months ago

boxsers • Rank 9.7 • Science 67%

Python package that provides a full range of functionality to process and analyze vibrational spectra (Raman, SERS, FTIR, etc.).

baseline-correction chemometrics cnn-keras data-augmentation deep-learning machine-learning pca-analysis preprocessing python raman-spectroscopy sers unsupervised-learning vibrational-spectroscopy

Updated 7 months ago

xcsf • Rank 12.4 • Science 64%

XCSF learning classifier system: rule-based online evolutionary machine learning

artificial-intelligence divide-and-conquer evolutionary-algorithms genetic-programming learning-classifier-systems least-squares machine-learning neural-networks neuroevolution online-learning reinforcement-learning rule-based rule-learning stochastic-gradient-descent supervised-learning unsupervised-learning xcs xcsf

Updated 7 months ago

goneat • Rank 7.0 • Science 67%

The GOLang implementation of NeuroEvolution of Augmented Topologies (NEAT) method to evolve and train Artificial Neural Networks without error back propagation

artificial-neural-networks augmenting-topologies neat neural-network neuroevolution reinforcement-learning reinforcement-learning-algorithms unsupervised-learning unsupervised-machine-learning

Updated 7 months ago

metacluster • Rank 6.5 • Science 67%

MetaCluster: An Open-Source Python Library for Metaheuristic-based Clustering Problems

classification clustering-methods genetic-algorithm global-search k-center-problem kmeans kmeans-clustering mealpy metaheuristic-based-clustering particle-swarm-optimization unsupervised-learning whale-optimization-algorithm

Updated 7 months ago

https://github.com/sintel-dev/orion • Rank 16.3 • Science 57%

Unsupervised time series anomaly detection library

anomaly-detection benchmarking data-science deep-learning generative-adversarial-network machine-learning orion signals time-series unsupervised-learning

Updated 7 months ago

lgn-autoencoder • Rank 2.4 • Science 67%

Lorentz group equivariant autoencoders based on Lorentz Group Network

anomaly-detection autoencoder deep-neural-networks equivariance graph-neural-networks high-energy-physics lorentz-group-network lorentz-transformations message-passing-neural-network particle-physics permutation-invariance physics unsupervised-learning

Updated 7 months ago

ClustAssess • Rank 11.2 • Science 57%

Tools for assessing clustering robustness

bioinformatics clustering genomics machine-learning parameter-optimization robustness single-cell unsupervised-learning

Updated 7 months ago

minisom • Rank 20.9 • Science 46%

:red_circle: MiniSom is a minimalistic implementation of the Self Organizing Maps

clustering dimensionality-reduction kohonen machine-learning manifold-learning neural-networks outlier-detection self-organizing-map som unsupervised-learning vector-quantization

Updated 7 months ago

voxelmorph • Rank 19.8 • Science 46%

Unsupervised Learning for Image Registration

deep-learning diffeomorphism image-alignment image-registration machine-learning optical-flow probabilistic unsupervised-learning

Updated 7 months ago

classix • Rank 10.6 • Science 49%

Fast and explainable clustering in Python

algorithm classification clustering cython data-analysis data-mining data-science machine-learning unsupervised-learning unsupervised-machine-learning visualization

Updated 7 months ago

https://github.com/yzhao062/pyod • Rank 13.3 • Science 46%

A Python Library for Outlier and Anomaly Detection, Integrating Classical and Deep Learning Techniques

anomaly anomaly-detection autoencoder data-analysis data-mining data-science deep-learning fraud-detection machine-learning neural-networks novelty-detection out-of-distribution-detection outlier-detection outlier-ensembles outliers python python3 unsupervised-learning

Updated 7 months ago

iohmm • Rank 11.7 • Science 46%

Input Output Hidden Markov Model (IOHMM) in Python

graphical-models hidden-markov-model linear-models machine-learning python scikit-learn semi-supervised-learning sequence-labeling sequence-to-sequence statsmodels supervised-learning time-series unsupervised-learning

Updated 7 months ago

SGCP • Rank 10.5 • Science 46%

SGCP: a spectral self-learning method for clustering genes in co-expression networks

bioinformatics clustering genecoexpressionnetwork graphs networkclustering networks self-training semi-supervised-learning unsupervised-learning

Updated 7 months ago

tyc-dataset • Rank 2.3 • Science 54%

Official and maintained implementation of the dataset paper "The TYC Dataset for Understanding Instance-Level Semantics and Motions of Cells in Microstructures" [ICCVW 2023].

cell-morphology cell-segmentation computer-vision dataset evaluation evaluation-metrics iccv iccvw instance-segmentation optical-flow panoptic-segmentation representation-learning supervised-learning unsupervised-learning yeast yeast-dataset

Updated 7 months ago

com.linkedin.isolation-forest • Rank 12.3 • Science 44%

A distributed Spark/Scala implementation of the isolation forest algorithm for unsupervised outlier detection, featuring support for scalable training and ONNX export for easy cross-platform inference.

anomaly-detection isolation-forest linkedin machine-learning onnx outlier-detection scala spark unsupervised-learning

Updated 7 months ago

unsupervised_analysis • Rank 4.7 • Science 49%

A general purpose Snakemake workflow and MrBiomics module to perform unsupervised analyses (dimensionality reduction & cluster analysis) and visualizations of high-dimensional data.

cluster-analysis cluster-validation clustering clustering-algorithm clustree data-science data-visualization densmap dimensionality-reduction heatmap high-dimensional-data leiden-algorithm pca principal-component-analysis snakemake umap unsupervised-learning visualization workflow

Updated 7 months ago

pymcr • Rank 15.7 • Science 33%

pyMCR: Multivariate Curve Resolution for Python

hyperspectral hyperspectral-data mixture-modeling multivariate multivariate-curve-resolution self-modeling-mixture-analysis spectroscopy unsupervised-learning unsupervised-learning-algorithms unsupervised-machine-learning

Updated 7 months ago

https://github.com/ermshaua/claspy • Rank 11.1 • Science 36%

ClaSPy: A Python package for time series segmentation.

change-point change-point-detection data-mining data-science machine-learning python research science segmentation time-series time-series-analysis time-series-data-mining time-series-segmentation unsupervised-learning

Updated 7 months ago

https://github.com/cbg-ethz/jnotype • Rank 2.5 • Science 36%

Probabilistic modeling of high-dimensional binary data in JAX

bayesian-statistics cancer-genomics clustering ideal-point-estimation jax probabilistic-machine-learning unsupervised-learning

Updated 7 months ago

gap-stat • Rank 14.2 • Science 23%

Dynamically get the suggested clusters in the data for unsupervised learning.

cluster cluster-count clustering kmeans python scikit-learn unsupervised unsupervised-learning

Updated 7 months ago

rsetse • Rank 8.1 • Science 13%

This package is used to calculate the Strain Elevation Tension Spring embedding (SETSe) for networks in R

embedding embedding-graphs graph-embedding igraph networks networkscience r unsupervised-learning

Updated 7 months ago

ruta • Rank 10.1 • Science 10%

Unsupervised Deep Architechtures in R

autoencoders deep-learning deep-neural-networks r unsupervised-learning

Updated 7 months ago

https://github.com/christophreich1996/smurf • Rank 1.8 • Science 10%

PyTorch port (inference only) of the paper "SMURF: Self-Teaching Multi-Frame Unsupervised RAFT with Full-Image Warping" [CVPR 2021].

computer-vision optical-flow unsupervised-learning unsupervised-optical-flow

Updated 7 months ago

https://github.com/chris-santiago/decomposition • Rank 1.1 • Science 10%

Simple ISOMAP and PCA decomposition algorithms

decomposition isomap pca unsupervised-learning

Updated 7 months ago

https://github.com/chris-santiago/gmm • Rank 0.0 • Science 10%

Gaussian Mixture Model with low rank approximation

gaussian-mixture-models gmm gmm-clustering low-rank-approximation unsupervised-learning

Updated 7 months ago

tsdae • Science 54%

Tranformer-based Denoising AutoEncoder for Sentence Transformers Unsupervised pre-training.

bert bert-embeddings lemone lemone-io machine-learning nltk pre-training python sentence-transformers transformers tsdae unsupervised-learning

Updated 7 months ago

https://github.com/biodataanalysisgroup/kmeranalyzer • Science 10%

An alignment-free method capable of processing and counting k-mers in a reasonable time, while evaluating multiple values of the k parameter concurrently.

feature-selection k-mers phylogenetics sars-cov-2 unsupervised-learning

Updated 7 months ago

https://github.com/chenliu-1996/cuts • Science 36%

[MICCAI 2024] CUTS: A Deep Learning and Topological Framework for Multigranular Unsupervised Medical Image Segmentation

deep-learning image-segmentation medical-image-segmentation medical-imaging miccai miccai-2024 miccai2024 multiscale multiscale-segmentation python pytorch self-supervised-learning semantic-segmentation unsupervised-deep-learning unsupervised-learning unsupervised-segmentation

Updated 7 months ago

https://github.com/chris-santiago/bookmarks-topics • Science 13%

Using unsupervised learning and language modeling to cluster and reorganize web bookmarks.

bert-embeddings bertopic bookmarks clustering generative-modeling hdbscan hydra llm openai taskfile umap unsupervised-learning

Updated 7 months ago

https://github.com/crmawande/clustering_algorithms • Science 13%

clustering-algorithm k-means-clustering unsupervised-learning

Updated 7 months ago

https://github.com/ashrithsagar/cp217-ml4cps-2024 • Science 13%

CP 217 Machine Learning for Cyber-Physical Systems, IISc

coursework iisc iisc-bangalore machine-learning machine-learning-algorithms supervised-learning unsupervised-learning

Updated 7 months ago

https://github.com/barabasi-lab/ai-bind • Science 36%

Interpretable AI pipeline improving binding predictions for novel protein targets and ligands

ai deep-learning drug-discovery machine-learning networkscience unsupervised-learning

Updated 7 months ago

clusteranalysisbasedfastingpostprandialglucoseinsulin • Science 57%

Code of the paper "Cluster Analysis Based on Fasting and Postprandial Plasma Glucose and Insulin Concentrations"

clustering glucose insulin k-means matlab unsupervised-learning

Updated 7 months ago

approaching-an-unknown-communication-system • Science 54%

Code/supplement for the paper "Approaching an unknown communication system by latent space exploration and causal inference"

animal-communication causal-inference deep-learning disentangled-representations gan latent-space unsupervised-learning

Updated 7 months ago

imesc • Science 44%

This app is intended to dynamically integrate machine learning techniques to explore multivariate data sets.

environmental-s knn machine-learning naive-bayes random-forest self-organizing-map stochastic-gradient-boosting supervised-learning support support-vector-machines unsupervised-learning

Updated 7 months ago

ml-book • Science 44%

An online book introduction to machine learning

computer-vision deep-learning machine-learning machine-learning-algorithms natural-language-processing neural-network neural-networks python supervised-learning time-series unsupervised-learning

Updated 7 months ago

indonesian-sentence-embeddings • Science 67%

Embedding Representation for Indonesian Sentences!

indonesia indonesian natural-language-processing sbert semantic-textual-similarity sentence-embeddings sentence-transformers unsupervised-learning

Updated 7 months ago

ml-oneday-course • Science 67%

This is a one-day machine learning introductory course for beginners

anomaly-detection classification clustering course dimensionality-reduction machine-learning machine-learning-algorithms ml-course ml-workflow regression scikit-learn supervised-learning unsupervised-learning

Updated 7 months ago

https://github.com/aiot-mlsys-lab/arch2vec • Science 10%

[NeurIPS 2020] "Does Unsupervised Architecture Representation Learning Help Neural Architecture Search?" by Shen Yan, Yu Zheng, Wei Ao, Xiao Zeng, Mi Zhang

automl neural-architecture-search representation-learning unsupervised-learning

Updated 7 months ago

https://github.com/awslabs/unsupervised-qa • Science 13%

Template-Based Question Generation from Retrieved Sentences for Improved Unsupervised Question Answering

amazon-ai-labs question-answering question-generation unsupervised-learning

Updated 7 months ago

r-python • Science 44%

Denetimsiz Makine Öğrenmesi Algoritmaları: R ve Python Uygulamaları Kitabındaki R ve Python kodları

clustering python r unsupervised-learning

Updated 7 months ago

https://github.com/danymukesha/pca-pwa • Science 13%

simplified manner for insights and decision-making by visualizing complex relationships with PCA web application

pca statistics unsupervised-learning

Updated 7 months ago

https://github.com/cern-it-innovation/latent-ad-qml • Science 23%

Unsupervised anomaly detection in the latent space of high energy physics events with quantum machine learning.

anomaly-detection particle-physics qml qti quantum-machine-learning unsupervised-learning

Updated 7 months ago

https://github.com/ammarlodhi255/ml_spelled_out • Science 13%

Collection of notebooks and python code of various machine learning algorithms from scratch.

machine-learning-algorithms ml-from-scratch scratch-implementation supervised-learning unsupervised-learning

Updated 7 months ago

https://github.com/core-bioinformatics/clustassesspy • Science 26%

bioinformatics clustering genomics machine-learning parameter-optimisation robustness single-cell unsupervised-learning

Updated 7 months ago

https://github.com/agopal42/permakey • Science 10%

Code repository complementing the ICLR 2021 paper "Unsupervised Object Keypoint Learning using Local Spatial Predictability" (https://arxiv.org/abs/2011.12930)

atari-2600 deep-reinforcement-learning tensorflow unsupervised-learning

Updated 7 months ago

https://github.com/aiot-mlsys-lab/cate • Science 10%

[ICML 2021 Oral] "CATE: Computation-aware Neural Architecture Encoding with Transformers" by Shen Yan, Kaiqiang Song, Fei Liu, Mi Zhang

automl neural-architecture-search representation-learning unsupervised-learning