Projects

Updated 6 months ago

planet • Rank 12.6 • Science 46%

For inferring ancestry, gestational age, cell type proportions, and preeclampsia status from placental DNA methylation array data

ancestry dna-methylation-data epigenetics genetics inference machine-learning placenta

Updated 6 months ago

geneXtendeR • Rank 13.6 • Science 33%

R/Bioconductor package for optimized functional annotation of ChIP-seq data

bioconductor bioinformatics c chip-seq computational-biology epigenetics functional-annotation r

Updated 6 months ago

hichipper • Rank 9.7 • Science 33%

A preprocessing and QC pipeline for HiChIP data

bioinformatics chromatin-interaction epigenetics hichip

Updated 6 months ago

mgatk • Rank 11.2 • Science 23%

mgatk: mitochondrial genome analysis toolkit

epigenetics genomics genotype mitochondrial python3 r single-cell

Updated 4 months ago

https://github.com/kundajelab/chromdragonn • Science 23%

Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellular contexts"

chromatin-accessibiity deep-learning epigenetics gene-regulation genomics

Updated 6 months ago

sammyseq • Science 67%

Pipeline for Sequential Analysis of MacroMolecules accessibilitY sequencing (SAMMY-seq) data, to analyze chromatin state.

3d-genome bioinformatics chromatin dna epigenetics epigenome epigenomics genome genomics next-generation-sequencing nextflow nf-core ngs pipeline sequencing workflow

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Open Source Science

planet • Rank 12.6 • Science 46%

geneXtendeR • Rank 13.6 • Science 33%

hichipper • Rank 9.7 • Science 33%

mgatk • Rank 11.2 • Science 23%

https://github.com/kundajelab/chromdragonn • Science 23%

sammyseq • Science 67%