pyhmmer • Rank 22.3 • Science 67%

Cython bindings and Python interface to HMMER3.

https://github.com/althonos/lightmotif • Rank 16.3 • Science 59%

A lightweight platform-accelerated library for biological motif scanning using position weight matrices.

pxblat • Rank 9.5 • Science 59%

PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT

pymsaviz • Rank 13.9 • Science 44%

MSA(Multiple Sequence Alignment) visualization python package for sequence analysis

cubar • Rank 8.2 • Science 49%

R Package for Codon Usage Bias Analysis. Comprehensive documentation and tutorials are available at:

peptides • Rank 13.2 • Science 36%

Physicochemical properties, indices and descriptors for amino-acid sequences.

https://github.com/biojulia/bioalignments.jl • Rank 12.8 • Science 33%

Sequence alignment tools

https://github.com/althonos/pymemesuite • Rank 9.2 • Science 36%

Cython bindings and Python interface to the MEME suite, a collection of tools for the analysis of sequence motifs.

seqArchR • Rank 10.6 • Science 23%

seqArchR: Identifying (promoter) sequence architectures de novo using NMF

rEMM • Rank 7.3 • Science 26%

https://github.com/compnet/seqbref • Science 13%

Sequence analysis of political trajectories over BRÉF data

https://github.com/cdcgov/clean-genes • Science 26%

A rust crate that automatically cleans up a gene alignment by trimming to ORF and identifying and/or removing problematic sequences.

flexidot • Science 67%

Highly customizable, ambiguity-aware dotplots for visual sequence analyses

https://github.com/althonos/pyncbitk • Science 49%

Cython bindings and Python interface to the NCBI C++ ToolKit (including BLAST+).

https://github.com/akikuno/midsv • Science 36%

a Python module to translate SAM into MIDSV format.