coupling macro-micro multiphysics multiscale research-and-development

imaging multiscale ngff ome-zarr-converter python scientific-computing xarray

automatic-differentiation dae dde differential-equations differentialequations hybrid-differential-equations julia models multiscale neural-differential-equations neural-ode ode scientific-ai scientific-machine-learning scientific-ml sciml sde

clustering community-detection leiden-algorithm louvain-algorithm multiscale python3

automatic-differentiation blackoil co2-sequestration compositional finite-volume multiscale porous-media-flow reservoir-simulation

data-visualization exploration higlass multiscale pattern-analysis pattern-discovery pattern-search

deep-learning image-segmentation medical-image-segmentation medical-imaging miccai miccai-2024 miccai2024 multiscale multiscale-segmentation python pytorch self-supervised-learning semantic-segmentation unsupervised-deep-learning unsupervised-learning unsupervised-segmentation

3D Atomistic simulations Biochemistry Colloidal Self-Assembly Data Structures Mesoscale Modelling and Simulations SAXS Sample atomisitc automation bash biomolecular biomolecular simulation coarse-grain coarse-grained condensed matter equilibration framework free software full atom full-atom git gitlab library molecular aggregates molecular arrangement molecular dynamics molecular modeling molecular structures multiscale multiscale modeling numerical simulation organic molecule physical-chemistry post-processing post-simulation analyses post-simulation analysis python python3 sans sas script self-aggregation self-assembly shape shapes shapespyer simulation simulation-framework smiles notation smiles strings soft matter software development template workflow workflow automation