Scientific Software
Updated 6 months ago
mcboost
mcboost: Multi-Calibration Boosting for R - Published in JOSS (2021)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago
VaMPy
VaMPy: An Automated and Objective Pipeline for Modeling Vascular Geometries - Published in JOSS (2023)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago
NIMPHS
NIMPHS: Numerous Instruments to Manipulate and Post-process Hydraulic Simulations - Published in JOSS (2023)
Scientific Software · Peer-reviewed
Updated 6 months ago
https://github.com/arup-group/elara
Command line utility for processing MATSim events output files.
Updated 6 months ago
deconv_code_data
Deconvolution of the growth law equation. Theory and experiments published at https://doi.org/10.5194/gi-11-293-2022
Updated 6 months ago
shapespyer
The project provides Python tool-chain and shell scripts for molecular simulation workflows: preparation, running and analysing molecular dynamics (MD) simulations of bio- and organic soft condensed matter.
3D
Atomistic simulations
Biochemistry
Colloidal Self-Assembly
Data Structures
Mesoscale
Modelling and Simulations
SAXS
Sample
atomisitc
automation
bash
biomolecular
biomolecular simulation
coarse-grain
coarse-grained
condensed matter
equilibration
framework
free software
full atom
full-atom
git
gitlab
library
molecular aggregates
molecular arrangement
molecular dynamics
molecular modeling
molecular structures
multiscale
multiscale modeling
numerical simulation
organic molecule
physical-chemistry
post-processing
post-simulation analyses
post-simulation analysis
python
python3
sans
sas
script
self-aggregation
self-assembly
shape
shapes
shapespyer
simulation
simulation-framework
smiles notation
smiles strings
soft matter
software development
template
workflow
workflow automation
Updated 6 months ago
stacie
Stable AutoCorrelation Integral Estimator
acf
autocorrelation-function
autocorrelation-integral
characteristic-timescales
data-analysis
exponential-correlation-time
integrated-correlation-time
lgpl
molecular-dynamics
open-source
post-processing
power-spectral-distribution
psd
python-package
scientific-computing
stacie
time-correlation
transport-properties
uncertainty-quantification