graphsim
graphsim: An R package for simulating gene expression data from graph structures of biological pathways - Published in JOSS (2020)
MiscMetabar
MiscMetabar: an R package to facilitate visualization and reproducibility in metabarcoding analysis - Published in JOSS (2023)
genometric.mspc.core
Using combined evidence from replicates to evaluate ChIP-seq peaks
ampligone
A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
sequencing-data-analysis-training
SIB course that introduces analysis of NGS data
ngs-variants-training
GitHub for the SIB courses NGS - Genome variant analysis
viroconstrictor
ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genome
charlie
Circrnas in Host And viRuses anaLysis pIpEline for Detection Annotation Quantification of circRNAs