matchms - processing and similarity evaluation of mass spectrometry data.
matchms - processing and similarity evaluation of mass spectrometry data. - Published in JOSS (2020)
pyam
pyam: a Python Package for the Analysis and Visualization of Models of the Interaction of Climate, Human, and Environmental Systems - Published in JOSS (2019)
fractopo
fractopo: A Python package for fracture network analysis - Published in JOSS (2023)
dython: A Set of Analysis and Visualization Tools for Data and Variables in Python
dython: A Set of Analysis and Visualization Tools for Data and Variables in Python - Published in JOSS (2025)
idf-analysis
idf-analysis: Heavy rainfall intensity as a function of duration and return period - Published in JOSS (2025)
ytree
ytree: A Python package for analyzing merger trees - Published in JOSS (2019)
Reducing the efforts to create reproducible analysis code with FieldTrip
Reducing the efforts to create reproducible analysis code with FieldTrip - Published in JOSS (2024)
PII-Codex
PII-Codex: a Python library for PII detection, categorization, and severity assessment - Published in JOSS (2023)
SmartEDA
SmartEDA: An R Package for Automated Exploratory Data Analysis - Published in JOSS (2019)
Cellocity
Cellocity: A Python package for analysis of confluent cell layer dynamics - Published in JOSS (2021)
multiqc
Aggregate results from bioinformatics analyses across many samples into a single report.
particle
Package to deal with particles, the PDG particle data table, PDGIDs, etc.
https://github.com/cytoscape/cytoscape.js
Graph theory (network) library for visualisation and analysis
pastas
Pastas is an open-source Python framework for the analysis of groundwater time series.
andes
Python toolbox / library for power system transient dynamics simulation with symbolic modeling and numerical analysis 🔥
Asimov
Asimov: A framework for coordinating parameter estimation workflows - Published in JOSS (2023)
decaylanguage
Package to parse decay files, describe and convert particle decays between digital representations.
lindemann
lindemann is a python package to calculate the Lindemann index of a lammps trajectory
ekpmeasure
Repository of analysis and computer control code for various experiments. Analysis module is designed to help the researcher wrangle large amounts of meta data
https://github.com/bluebrain/snap
The Blue Brain Pythonic Simulation and Network Analysis Productivity layer
scenedetect
:movie_camera: Python and OpenCV-based scene cut/transition detection program & library.
pandapower
Convenient Power System Modelling and Analysis based on PYPOWER and pandas
scikit-hep
Metapackage of Scikit-HEP project data analysis packages for Particle Physics.
cloupy
CLOUPY IS NO LONGER SUPPORTED. PLEASE, SEE README. cloupy is a Python library for climatological data downloading, processing and visualizing. The main goal of the library is to help its author in writing a BA thesis. The library is well adapted to academic work - used data sources are reliable and graphs are easy to modify.
yuview
The Free and Open Source Cross Platform YUV Viewer with an advanced analytics toolset
genometric.mspc.core
Using combined evidence from replicates to evaluate ChIP-seq peaks
ccbs-study-3
Does Adolescent and Adult Training Impact Canine Behavior Outcomes?
omc3
Python 3 codes for beam optics measurements and corrections in circular particle accelerators
PowerSimulations.jl
Julia for optimization simulation and modeling of PowerSystems. Part of the Scalable Integrated Infrastructure Planning Initiative at the National Renewable Energy Lab.
ueqplusanalyze
UEQ+ Data Analyzer based on the given Tool from https://ueqplus.ueq-research.org/
codechecker
CodeChecker is an analyzer tooling, defect database and viewer extension for static and dynamic analyzer tools.
SimSurvey
A tool for comparing the design and analysis of surveys by simulating spatially-correlated populations
https://github.com/andrewtavis/poli-sci-kit
Political elections, appointment, analysis and visualization in Python
OrbitalTrajectories
OrbitalTrajectories.jl is a modern orbital trajectory design, optimisation, and analysis library for Julia, providing methods and tools for designing spacecraft orbits and transfers via high-performance simulations of astrodynamical models.
syncopy
Systems Neuroscience Computing in Python: user-friendly analysis of large-scale electrophysiology data
cytoflow
A Python toolbox for quantitative, reproducible flow cytometry analysis
https://github.com/aeternalis-ingenium/anomalytics
The ultimate anomaly detection and its analytics.
https://github.com/introlab/openimu
Open Source Analytics & Visualisation Software for Inertial Measurement Units
solar-and-wind-potentials
Estimation of solar and wind power generation potentials in Europe.
climatebase.jl
Tools to analyze and manipulate climate (spatiotemporal) data. Also used by ClimateTools and ClimatePlots
possibility-for-electricity-autarky
Is your European region able to provide itself with 100% renewable electricity?
https://github.com/open-cogsci/datamatrix
An intuitive, Pythonic way to work with tabular data
aroma.affymetrix
🔬 R package: Analysis of Large Affymetrix Microarray Data Sets
msmbuilder
:building_construction: Statistical models for biomolecular dynamics :building_construction:
NYISOToolkit
Access data, statistics, and visualizations for New York's electricity grid.
birds-eye-view-trajectory-prediction-for-autonomous-driving
This repository contains our work on a comprehensive investigation on motion prediction for Autonomous Vehicles using the PowerBEV framework and a Multi-Camera setup. Validated trajectory forecasting capabilities on the NuScenes, Woven and Argoverse datasets and identified challenges in model generalization across these datasets.
bioCancer
:cancer: :free: A Shiny App for Interactive Multi-OMICS Cancer Data Visualization and analysis
https://github.com/biocore/qiime
Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.
pathcore-t
Methods to build a network of pathway co-occurrence relationships out of expression signatures extracted from transcriptomic compendia.
https://github.com/aeturrell/specification_curve
Specification Curve is a Python package that performs specification curve analysis: exploring how a coefficient varies under multiple different specifications of a statistical model.
https://github.com/lokinou/p3k_offline_analysis
P300 speller offline analysis recorded with Openvibe and BCI2000. Using python-MNE
fairroot
C++ simulation, reconstruction and analysis framework for particle physics experiments
https://github.com/cosima/cosima-cookbook
Framework for indexing and querying ocean-sea ice model output.
empire-analysis
A sustainable literature review for analyzing the state and evolution of empirical research in requirements engineering using KG-EmpiRE.
sasfit
A curve fitting program for small-angle scattering curves, mostly from SAXS and SANS experiments in analytical or biological chemistry. 📄https://doi.org/10.1107/S1600576722009037 📄https://doi.org/10.1107/S1600576717011979 📄https://doi.org/10.1107/S1600576715016544
https://github.com/bamresearch/jupyter-analysis-tools
Common Python helpers for data analysis notebooks in GIT repositories.
https://github.com/bamresearch/particle_concentration_from_dls
A python implementation for determining nanoparticle number concentrations from multi-angle dynamic light scattering (DLS) measurements. Based on "Austin, J., Minelli, C., Hamilton, D. et al. Nanoparticle number concentration measurements by multi-angle dynamic light scattering. J Nanopart Res 22, 108 (2020)." https://doi.org/10.1007/s11051-020-04840-8