Projects

Updated 6 months ago

ontology-development-kit • Rank 9.5 • Science 77%

Ontology lifecycle management

continuous-integration monarchinitiative obo obofoundry ontology owl protege robot travis

Updated 6 months ago

pronto • Rank 19.2 • Science 49%

A Python frontend to (Open Biomedical) Ontologies.

bioinformatics obo obo-graphs obofoundry ontology owl parser python semantic-web

Updated 6 months ago

https://github.com/biopragmatics/pyobo • Rank 14.6 • Science 49%

📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures

bioinformatics biopragmatics bioregistry obo obofoundry ontologies

Updated 6 months ago

plant-trait-ontology • Rank 8.9 • Science 46%

Explore the Plant Trait Ontology on the Planteome site.

obo obofoundry owl phenotype plant-trait-ontology plant-traits

Updated 6 months ago

environmental-exposure-ontology • Rank 6.7 • Science 46%

Modular environmental exposures ontology

environment exposure health monarchinitiative obo obofoundry ontology owl

Updated 6 months ago

https://github.com/biopragmatics/obo-db-ingest • Rank 3.5 • Science 49%

🗄️ Conversion of biomedical nomenclatures like HGNC to OBO

biocuration obo obofoundry obographs obographviz ontologies owl rdf

Updated 6 months ago

covid19-epidemiology-ontology • Rank 2.9 • Science 49%

Epidemiology and monitoring ontology for COVID-19

axiom-patterns biohackeu20 covid-19 epidemiology obo obofoundry ontology owl

Updated 6 months ago

psims • Rank 13.4 • Science 36%

A declarative API for writing XML documents for HUPO PSI-MS mzML and mzIdentML

mzidentml mzml obo xml-serialization

Updated 6 months ago

https://github.com/althonos/obofoundry.rs • Rank 11.2 • Science 36%

Structures to deserialize OBO Foundry listings into.

berkeley-bop obo obofoundry rust serde

Updated 6 months ago

obofoundry.github.io • Rank 10.9 • Science 36%

Metadata and website for the Open Bio Ontologies Foundry Ontology Registry

annotation biocuration bioinformatics life-sciences metadata obo obofoundry ontology ontology-registry open-science open-source semantic-web

Updated 6 months ago

obonet • Rank 16.6 • Science 26%

OBO-formatted ontologies → networkx (Python 3)

network networkx obo obo-files obo-formatted-ontologies ontology parser python rephetio

Updated 6 months ago

https://github.com/biolink/ontobio • Rank 16.6 • Science 23%

python library for working with ontologies and ontology associations

bioinformatics gene-ontology graph obo obofoundry ontology ontology-tools python rdf semantic-web sparql

Updated 6 months ago

https://github.com/cthoyt/ontoportal-client • Rank 13.2 • Science 10%

🎡 Unified access to OntoPortal instances like BioPortal, AgroPortal, and EcoPortal

agroportal bioportal cookiecutter-snekpack ecoportal obo obofoundry ontologies ontoportal python

Updated 6 months ago

https://github.com/cthoyt/obographs • Science 36%

A Pydantic model for OBO Graph JSON

curies obo obofoundry ontology owl semantic-web uris

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Open Source Science

ontology-development-kit • Rank 9.5 • Science 77%

pronto • Rank 19.2 • Science 49%

https://github.com/biopragmatics/pyobo • Rank 14.6 • Science 49%

plant-trait-ontology • Rank 8.9 • Science 46%

environmental-exposure-ontology • Rank 6.7 • Science 46%

https://github.com/biopragmatics/obo-db-ingest • Rank 3.5 • Science 49%

covid19-epidemiology-ontology • Rank 2.9 • Science 49%

psims • Rank 13.4 • Science 36%

https://github.com/althonos/obofoundry.rs • Rank 11.2 • Science 36%

obofoundry.github.io • Rank 10.9 • Science 36%

obonet • Rank 16.6 • Science 26%

https://github.com/biolink/ontobio • Rank 16.6 • Science 23%

https://github.com/cthoyt/ontoportal-client • Rank 13.2 • Science 10%

https://github.com/cthoyt/obographs • Science 36%