OSMnx
OSMnx: A Python package to work with graph-theoretic OpenStreetMap street networks - Published in JOSS (2017)
Netwulf
Netwulf: Interactive visualization of networks in Python - Published in JOSS (2019)
Netgraph
Netgraph: Publication-quality Network Visualisations in Python - Published in JOSS (2023)
VRPy
VRPy: A Python package for solving a range of vehicle routing problems with a column generation approach - Published in JOSS (2020)
kglab
Graph Data Science: an abstraction layer in Python for building knowledge graphs, integrated with popular graph libraries – atop Pandas, NetworkX, RAPIDS, RDFlib, pySHACL, PyVis, morph-kgc, pslpython, pyarrow, etc.
xyz2graph
Convert an xyz file into a molecular graph and create a 3D visualisation of the graph.
pytrack
a Map-Matching-based Python Toolbox for Vehicle Trajectory Reconstruction
last-mile-routing-analyzer
lmr-analyzer: A powerful toolkit to analyze the interaction between last mile operations and the street network design.
ustore
Multi-Modal Database replacing MongoDB, Neo4J, and Elastic with 1 faster ACID solution, with NetworkX and Pandas interfaces, and bindings for C 99, C++ 17, Python 3, Java, GoLang 🗄️
wiki-entity-summarization-preprocessor
Convert Wikidata and Wikipedia raw files to filterable formats with a focus of marking Wikidata as summaries based on their Wikipedia abstracts.
https://github.com/benchmark-urbanism/cityseer-api
Computational tools for urban analysis
fa2
Fastest Gephi's ForceAtlas2 graph layout algorithm implemented for Python and NetworkX
pywhy-graphs
[Experimental] Causal graphs that are networkx-compliant for the py-why ecosystem.
AgentPy
AgentPy: A package for agent-based modeling in Python - Published in JOSS (2021)
pynets
A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning
https://github.com/bluebrain/bluegraph
Python framework for graph analytics and co-occurrence analysis
wiki-entity-summarization
This repository hosts a comprehensive suite for graph-based entity summarization dataset generating from user-selected Wikipedia pages. Utilizing a series of interconnected modules, it leverages Wikidata and Wikipedia dumps to construct a dataset, alongside auto-generated ground truths.
https://github.com/benmaier/smallworld
Generate and analyze small-world networks according to the revised Watts-Strogatz model where the randomization at β = 1 is truly equal to the Erdős-Rényi network model.
https://github.com/benmaier/sixdegrees
Sample from a variety of small-world network models in Python and C++. This includes a model with modular hierarchical community structure.
metaboverse
Visualization and analysis platform for metabolic data and network pattern recognition
citation-network-app
An interactive web app that fetches the top 20 related papers from Google Scholar (via SerpAPI), builds a citation graph, and renders it in pages of 10 nodes each.
https://github.com/capjamesg/wiki-graph-analysis
A graph analysis of the IndieWeb wiki.
https://github.com/dalmolingroup/easylayout
interactive force-directed graph layouts within RStudio