Netgraph
Netgraph: Publication-quality Network Visualisations in Python - Published in JOSS (2023)
rdflib
RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information.
pyflowline
pyflowline: a mesh-independent river network generator for hydrologic models - Published in JOSS (2023)
Raphtory
Raphtory: The temporal graph engine for Rust and Python - Published in JOSS (2024)
The plebeian Graph Library
The plebeian Graph Library: A WebGL based network visualisation and diagnostics package - Published in JOSS (2024)
graynet
graynet: single-subject morphometric networks for neuroscience connectivity applications - Published in JOSS (2018)
pymeasure
Scientific measurement library for instruments, experiments, and live-plotting
Histogram-weighted Networks for Feature Extraction, Connectivity and Advanced Analysis in Neuroscience
Histogram-weighted Networks for Feature Extraction, Connectivity and Advanced Analysis in Neuroscience - Published in JOSS (2017)
pyhexwatershed
The Python interface to HexWatershed a mesh independent flow direction model for hydrologic models
pytrack
a Map-Matching-based Python Toolbox for Vehicle Trajectory Reconstruction
https://github.com/materialsvirtuallab/m3gnet
Materials graph network with 3-body interactions featuring a DFT surrogate crystal relaxer and a state-of-the-art property predictor.
quit-store
🖧 Quads in Git - Distributed Version Control for RDF Knowledge Bases
interactive_data_editor
A Software to interactively edit data in a graphical manner
ccsd
Combinatorial Complex Score-based Diffusion model using stochastic differential equations
io.joern:c2cpg_2.13
Open-source code analysis platform for C/C++/Java/Binary/Javascript/Python/Kotlin based on code property graphs. Discord https://discord.gg/vv4MH284Hc
louvain-communities-openmp-dynamic
Design of OpenMP-based Parallel Dynamic Louvain algorithm for community detection.
osmogrid
OSMoGrid is a tool to generate life like electrical grid models based on publicly available data, mainly OpenStreetMap. The tool puts a special focus on low voltage grids.
com.arcadedb:arcadedb-console
ArcadeDB Multi-Model Database, one DBMS that supports SQL, Cypher, Gremlin, HTTP/JSON, MongoDB and Redis. ArcadeDB is a conceptual fork of OrientDB, the first Multi-Model DBMS. ArcadeDB supports Vector Embeddings.
fa2
Fastest Gephi's ForceAtlas2 graph layout algorithm implemented for Python and NetworkX
how_attentive_are_gats
Code for the paper "How Attentive are Graph Attention Networks?" (ICLR'2022)
ConstrainedShortestPaths
Julia implementation of (resource) Constrained Shortest Path algorithms
structure-seer
The implementation, training and evaluation of a Structure Seer machine learning model designed for reconstruction of adjacency of a molecular graph from the labelling of its nodes.
graphscope
🔨 🍇 💻 🚀 GraphScope: A One-Stop Large-Scale Graph Computing System from Alibaba | 一站式图计算系统
spectrum-plotter
A Python package for creating publication quality plots for neutron / photon / particle spectrum
alchemy
Archived - High performance, realtime BaaS with RBAC, graphing, full text search, S3 / B2 Storage and GIS with a GraphQL, gRPC and REST API
https://github.com/bytedance/flowgram.ai
FlowGram is a node-based flow building engine that helps developers quickly create workflows in either fixed layout or free connection layout modes
bottleneck
Code for the paper: "On the Bottleneck of Graph Neural Networks and Its Practical Implications"
multiagentpathfinding.jl
Structures and algorithms for Multi-Agent PathFinding in Julia
sgc
official implementation for the paper "Simplifying Graph Convolutional Networks"
pathwayspace
PathwaySpace is an R package that creates landscape images from graphs containing vertices (nodes), edges (lines), and a signal associated with the vertices.
https://github.com/llnl/callflow
Visualization tool for analyzing call trees and graphs
https://github.com/biolink/ontobio
python library for working with ontologies and ontology associations
tutorial
Tutorials on machine learning, artificial intelligence, data science with math explanation and reusable code (in python and R)
https://github.com/astrazeneca/onto_merger
OntoMerger is an ontology alignment library for deduplicating knowledge graph nodes that represent the same domain.
https://github.com/centrefordigitalhumanities/gephi
Materials for "Network visualization – introductory Gephi/Python workshop"
https://github.com/dankelley/imagedigitizer
R app to digitize points in a PNG diagram
https://github.com/kjappelbaum/moffragmentor
Split a MOF into its building blocks.
https://github.com/algebraicjulia/semagrams.jl
A graphical editor for graph-like structures
https://github.com/famarks/grafarg
Grafarg is an interactive data analytics and graphical data visualization application. Grafarg being a progressive fork of Grafana 7.5.17 continues to be available under open source Apache 2.0 License
https://github.com/dair-ai/gnns-recipe
🟠 A study guide to learn about Graph Neural Networks (GNNs)
https://github.com/EtymoIO/EvolvingGraphs.jl
Working with time-dependent networks in Julia
pagerank-barrierfrees-openmp-dynamic
Design of OpenMP-based statically scheduled Barrier-free Dynamic PageRank algorithm for link analysis.
louvain-communities-dynamic
Comparing static vs dynamic approaches of the Louvain algorithm for community detection.
https://github.com/chakravala/vertex.jl
Typeset scattered graph data rewriter based on LaTeX nodes
sparsematrixcolorings.jl
Coloring algorithms for sparse Jacobian and Hessian matrices
pagerank-openmp-dynamic
Design of OpenMP-based Parallel Dynamic PageRank algorithm for measuring importance.
duckpgq-extension
DuckDB extension that adds support for SQL/PGQ and graph algorithms
tree-document-topology-visualizer
A software to draw the topology of a TREE view
matlab-igraph: bringing igraph to MATLAB
matlab-igraph: bringing igraph to MATLAB - Published in JOSS (2025)
GridGraphs
Graphs defined by a grid of vertices. Compatible with the Graphs.jl ecosystem