maftools • Rank 22.2 • Science 59%

Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

multi-task-pybullet-drones • Rank 4.2 • Science 77%

polarimetry • Rank 4.2 • Science 77%

Polarimetry for the decay Λc → p K π

spezicontact • Rank 4.2 • Science 77%

Spezi module to display contact information

laserfarm • Rank 14.2 • Science 67%

Laserchicken Framework for Applications in Research in Macro-ecology

DFTK • Rank 14.1 • Science 67%

Density-functional toolkit

ray • Rank 35.1 • Science 46%

Ray is an AI compute engine. Ray consists of a core distributed runtime and a set of AI Libraries for accelerating ML workloads.

ecoconsprereg • Rank 4.1 • Science 77%

Designing, Evaluating and Testing Preregistration Templates for Ecology and Conservation

block2 • Rank 14.1 • Science 67%

Efficient parallel quantum chemistry DMRG in MPO formalism

torchtune • Rank 27.1 • Science 54%

PyTorch native post-training library

geostatspydemos • Rank 4.0 • Science 77%

Well-documented demonstration workflows with the GeostatsPy package.

genparticlefilters.jl • Rank 6.0 • Science 75%

Building blocks for simple and advanced particle filtering in Gen.

xhistogram • Rank 17.0 • Science 64%

Fast, flexible, label-aware histograms for numpy and xarray

anisotropy • Rank 4.0 • Science 77%

Toolkit for the study of seismic anisotropy.

gigs — Peer-reviewed • Rank 4.0 • Science 77%

gigs: A package for standardising fetal, neonatal, and child growth assessment - Published in JOSS (2025)

sdtf • Rank 4.0 • Science 77%

Exploring streaming options for decision trees and random forests. Based on scikit-learn fork.

forestplot • Rank 14.0 • Science 67%

A Python package to make publication-ready but customizable coefficient plots.

spectrochempy • Rank 14.0 • Science 67%

SpectroChemPy is a framework for processing, analyzing and modeling spectroscopic data for chemistry with Python

science-gateway • Rank 6.0 • Science 75%

Unidata Science Gateway on the NSF Jetstream2 Cloud

hetnetpy • Rank 13.9 • Science 67%

Hetnets in Python (relocated from dhimmel/hetio)

pyramid-skosprovider • Rank 13.9 • Science 67%

Attach SKOS providers to a pyramid application

tdms • Rank 5.9 • Science 75%

Time Domain Maxwell Solver

pyts • Rank 21.9 • Science 59%

A Python package for time series classification

mpmath • Rank 16.9 • Science 64%

Python library for arbitrary-precision floating-point arithmetic

citric • Rank 13.9 • Science 67%

A client to the LimeSurvey Remote Control API 2, written in modern Python.

fiona • Rank 26.9 • Science 54%

Fiona reads and writes geographic data files

frictionless • Rank 13.9 • Science 67%

R package to read and write Frictionless Data Packages

greedysub • Rank 3.9 • Science 77%

Reduce redundancy in dataset using greedy algorithms: select subset of data such that no items are closely related

cellmigration • Rank 3.9 • Science 77%

Analysis of cell migration in Igor Pro

forestecology • Rank 3.9 • Science 77%

forestecology R package of Methods and Data for Forest Ecology Model Fitting and Assessment

evalica • Rank 13.9 • Science 67%

Evalica, your favourite evaluation toolkit

openmc • Rank 13.9 • Science 67%

OpenMC Monte Carlo Code

findpeaks • Rank 16.8 • Science 64%

The detection of peaks and valleys in a 1d-vector or 2d-array (image)

rlberry • Rank 13.8 • Science 67%

An easy-to-use reinforcement learning library for research and education.

skytag • Rank 3.8 • Science 77%

Annotate transient sources or galaxies with the percentage credibility region they reside within on a given HealPix sky map.

kornia • Rank 29.8 • Science 51%

🐍 Geometric Computer Vision Library for Spatial AI

clifford • Rank 16.8 • Science 64%

Geometric Algebra for Python

2021-data-and-software-class • Rank 3.8 • Science 77%

Material and script for the data and software class.

marketlib • Rank 3.8 • Science 77%

Project to model the trading of energy to different markets using various power plant models

ImSwitch — Peer-reviewed • Rank 3.8 • Science 77%

ImSwitch: Generalizing microscope control in Python - Published in JOSS (2021)

pygeoutils • Rank 13.8 • Science 67%

A part of HyRiver software stack for handling geospatial data manipulations

felupe • Rank 13.8 • Science 67%

:mag: finite element analysis for continuum mechanics of solid bodies

pyriemann • Rank 21.8 • Science 59%

Machine learning for multivariate data through the Riemannian geometry of positive definite matrices in Python

egglog • Rank 26.8 • Science 54%

egraphs + datalog!

MSnbase • Rank 21.7 • Science 59%

Base Classes and Functions for Mass Spectrometry and Proteomics

class-resolver • Rank 16.7 • Science 64%

🔍 Lookup classes and instantiate them with style

thinkmatch • Rank 8.7 • Science 72%

A research protocol for deep graph matching.

pynhd • Rank 13.7 • Science 67%

A part of HyRiver software stack that provides access to NHDPlus data through web services

mmcv • Rank 26.7 • Science 54%

OpenMMLab Computer Vision Foundation

missforest • Rank 13.7 • Science 67%

Arguably the best missing values imputation method.

pytorch-cinic • Rank 3.7 • Science 77%

Small utility package providing easy-install dataloader for https://github.com/BayesWatch/cinic-10#data-loading

dashboard • Rank 3.7 • Science 77%

Dashboard: Analysis of pedestrian dynamics based on trajectory files

crit • Rank 3.7 • Science 77%

A tool for automating Rewriting Induction (RI) for Logically Constrained Term Rewriting Systems (LCTRSs)

chemprop • Rank 21.7 • Science 59%

Message Passing Neural Networks for Molecule Property Prediction

Measurements • Rank 16.7 • Science 64%

Error propagation calculator and library for physical measurements. It supports real and complex numbers with uncertainty, arbitrary precision calculations, operations with arrays, and numerical integration.

noisereduce • Rank 21.6 • Science 59%

Noise reduction in python using spectral gating (speech, bioacoustics, audio, time-domain signals)

org.soot-oss • Rank 13.6 • Science 67%

A new version of Soot with a completely overhauled architecture

inseq • Rank 13.6 • Science 67%

Interpretability for sequence generation models 🐛 🔍

cool-seq-tool • Rank 13.6 • Science 67%

effector • Rank 26.6 • Science 54%

Business logic with ease ☄️

geoheat-gb • Rank 3.6 • Science 77%

GeoHeat-GB: A geospatial power systems planning model for heat electrification in Britain

reactant • Rank 5.6 • Science 75%

multilang-probe • Rank 3.6 • Science 77%

A solution to detect languages and type characters in a multilingual setting.

grlp • Rank 3.6 • Science 77%

Long-profile evolution of gravel-bed rivers

magika • Rank 26.5 • Science 54%

Detect file content types with deep learning

snakemake-workflow-fermi-lat • Rank 3.5 • Science 77%

A Snakemake workflow for Fermi-LAT data reduction

patientmatcher • Rank 3.5 • Science 77%

A MatchMaker Exchange server

disba • Rank 13.5 • Science 67%

Numba-accelerated computation of surface wave dispersion

NeuralPDE • Rank 16.5 • Science 64%

Physics-Informed Neural Networks (PINN) Solvers of (Partial) Differential Equations for Scientific Machine Learning (SciML) accelerated simulation

JuMP • Rank 21.5 • Science 59%

Modeling language for Mathematical Optimization (linear, mixed-integer, conic, semidefinite, nonlinear)

mcfly • Rank 13.5 • Science 67%

A deep learning tool for time series classification and regression

proposal • Rank 13.5 • Science 67%

Monte Carlo Simulation propagating charged Leptons through Media as C++ Library

cantera • Rank 21.5 • Science 59%

Chemical kinetics, thermodynamics, and transport tool suite

ivy • Rank 26.5 • Science 54%

Convert Machine Learning Code Between Frameworks

translator-openpredict • Rank 8.5 • Science 72%

🔮🐍 A package to help serve predictions of biomedical concepts associations as Translator Reasoner API

kerblam • Rank 13.5 • Science 67%

A Rust CLI to manage your data analysis projects in a simple and streamlined way, getting reproducibility for free.

computational-algebra • Rank 16.5 • Science 64%

General-Purpose Computer Algebra System as an EDSL in Haskell

marlware • Rank 16.4 • Science 64%

Multi-Robot Warehouse (RWARE): A multi-agent reinforcement learning environment

gradio • Rank 34.4 • Science 46%

Build and share delightful machine learning apps, all in Python. 🌟 Star to support our work!

skglm • Rank 16.4 • Science 64%

Fast and modular sklearn replacement for generalized linear models

treeple • Rank 13.4 • Science 67%

Scikit-learn compatible decision trees beyond those offered in scikit-learn

ehrqc • Rank 3.4 • Science 77%

EHRQC

technicalpaperexamplenotebooks • Rank 3.4 • Science 77%

a collection of Jupyter notebooks used in the technical eWaterCycle paper

aluminum • Rank 8.4 • Science 72%

High-performance, GPU-aware communication library

genmod • Rank 13.4 • Science 67%

Annotate models of genetic inheritance patterns in variant files (vcf files)

verovio • Rank 21.4 • Science 59%

🎵 Music notation engraving library for MEI with MusicXML and Humdrum support and various toolkits (JavaScript, Python)

volcano.sh/volcano • Rank 26.4 • Science 54%

A Cloud Native Batch System (Project under CNCF)

gpurecsplit • Rank 3.3 • Science 77%

Parallel space-efficient minimal perfect hash function on SIMD and GPU

pytesimal • Rank 3.3 • Science 77%

Model the conductive cooling of small planetary bodies with temperature-dependent material properties

bycycle • Rank 13.3 • Science 67%

Cycle-by-cycle analysis of neural oscillations.

ezomero • Rank 13.3 • Science 67%

A module with convenience functions for writing Python code that interacts with OMERO.

wtm • Rank 3.3 • Science 77%

Use climate and topographic input data to compute depth to water table, and height of surface water as lakes.

grf • Rank 21.3 • Science 59%

Generalized Random Forests

volatility3 • Rank 26.3 • Science 54%

Volatility 3.0 development

pints • Rank 18.3 • Science 62%

Probabilistic Inference on Noisy Time Series

netdiffuseR • Rank 13.3 • Science 67%

netdiffuseR: Analysis of Diffusion and Contagion Processes on Networks

sliderule • Rank 16.2 • Science 64%

Server and client framework for on-demand science data processing in the cloud

GeoStats.jl -- High-performance geostatistics in Julia — Peer-reviewed • Rank 13.2 • Science 67%

GeoStats.jl -- High-performance geostatistics in Julia - Published in JOSS (2018)

geb • Rank 13.2 • Science 67%

mrsimulator • Rank 13.2 • Science 67%

A fast solid-state NMR spectrum simulation and analysis library.