cdk • Rank 27.4 • Science 54%

The Chemistry Development Kit

hyperspectral-regression • Rank 4.4 • Science 77%

Code examples for the book chapter "Supervised, Semi-Supervised and Unsupervised Learning for Hyperspectral Regression".

skosprovider-getty • Rank 14.4 • Science 67%

Skosprovider implementation of the Getty Vocabularies

pythae • Rank 17.4 • Science 64%

Unifying Variational Autoencoder (VAE) implementations in Pytorch (NeurIPS 2022)

tpot • Rank 22.4 • Science 59%

A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.

BisPy — Peer-reviewed • Rank 4.4 • Science 77%

BisPy: Bisimulation in Python - Published in JOSS (2021)

vegperiod • Rank 14.3 • Science 67%

R Package to determine Thermal Vegetation Periods

mpds-client • Rank 4.3 • Science 77%

MPDS API client library in Python

cytodataframe • Rank 4.3 • Science 77%

An in-memory data analysis format for single-cell profiles alongside their corresponding images and segmentation masks.

armory-testbed • Rank 14.3 • Science 67%

ARMORY Adversarial Robustness Evaluation Test Bed

torchopt • Rank 17.3 • Science 64%

TorchOpt is an efficient library for differentiable optimization built upon PyTorch.

vedo • Rank 22.3 • Science 59%

A python module for scientific analysis of 3D data based on VTK and Numpy

cpprb • Rank 14.3 • Science 67%

Fast Flexible Replay Buffer Library (Mirror repository of https://gitlab.com/ymd_h/cpprb)

pypsa-eur-project • Rank 4.3 • Science 77%

radiipolynomial.jl • Rank 4.3 • Science 77%

Library for computer-assisted proofs in dynamical systems

xarray-dataclass • Rank 4.3 • Science 77%

:zap: xarray data creation by data classes

ebcpy • Rank 14.3 • Science 67%

pyrtools • Rank 14.3 • Science 67%

image pyramid code in python 3

https://github.com/bluebrain/efel • Rank 9.2 • Science 72%

Electrophys Feature Extraction Library

spec2vec • Rank 14.2 • Science 67%

Word2Vec based similarity measure of mass spectrometry data.

pyaudioanalysis • Rank 22.2 • Science 59%

Python Audio Analysis Library: Feature Extraction, Classification, Segmentation and Applications

nuflux • Rank 9.2 • Science 72%

A library for calculating atmospheric neutrino fluxes.

package-boutroslab-plotting-general • Rank 14.2 • Science 67%

Functions to Create Publication-Quality Plots

sinergym • Rank 14.2 • Science 67%

Gym environment for building simulation and control using reinforcement learning

biopython • Rank 32.2 • Science 49%

Official git repository for Biopython (originally converted from CVS)

maftools • Rank 22.2 • Science 59%

Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

polarimetry • Rank 4.2 • Science 77%

Polarimetry for the decay Λc → p K π

spezicontact • Rank 4.2 • Science 77%

Spezi module to display contact information

multi-task-pybullet-drones • Rank 4.2 • Science 77%

laserfarm • Rank 14.2 • Science 67%

Laserchicken Framework for Applications in Research in Macro-ecology

DFTK • Rank 14.1 • Science 67%

Density-functional toolkit

ray • Rank 35.1 • Science 46%

Ray is an AI compute engine. Ray consists of a core distributed runtime and a set of AI Libraries for accelerating ML workloads.

ecoconsprereg • Rank 4.1 • Science 77%

Designing, Evaluating and Testing Preregistration Templates for Ecology and Conservation

block2 • Rank 14.1 • Science 67%

Efficient parallel quantum chemistry DMRG in MPO formalism

torchtune • Rank 27.1 • Science 54%

PyTorch native post-training library

geostatspydemos • Rank 4.0 • Science 77%

Well-documented demonstration workflows with the GeostatsPy package.

genparticlefilters.jl • Rank 6.0 • Science 75%

Building blocks for simple and advanced particle filtering in Gen.

xhistogram • Rank 17.0 • Science 64%

Fast, flexible, label-aware histograms for numpy and xarray

anisotropy • Rank 4.0 • Science 77%

Toolkit for the study of seismic anisotropy.

gigs — Peer-reviewed • Rank 4.0 • Science 77%

gigs: A package for standardising fetal, neonatal, and child growth assessment - Published in JOSS (2025)

sdtf • Rank 4.0 • Science 77%

Exploring streaming options for decision trees and random forests. Based on scikit-learn fork.

forestplot • Rank 14.0 • Science 67%

A Python package to make publication-ready but customizable coefficient plots.

spectrochempy • Rank 14.0 • Science 67%

SpectroChemPy is a framework for processing, analyzing and modeling spectroscopic data for chemistry with Python

science-gateway • Rank 6.0 • Science 75%

Unidata Science Gateway on the NSF Jetstream2 Cloud

hetnetpy • Rank 13.9 • Science 67%

Hetnets in Python (relocated from dhimmel/hetio)

pyramid-skosprovider • Rank 13.9 • Science 67%

Attach SKOS providers to a pyramid application

tdms • Rank 5.9 • Science 75%

Time Domain Maxwell Solver

pyts • Rank 21.9 • Science 59%

A Python package for time series classification

mpmath • Rank 16.9 • Science 64%

Python library for arbitrary-precision floating-point arithmetic

citric • Rank 13.9 • Science 67%

A client to the LimeSurvey Remote Control API 2, written in modern Python.

fiona • Rank 26.9 • Science 54%

Fiona reads and writes geographic data files

frictionless • Rank 13.9 • Science 67%

R package to read and write Frictionless Data Packages

cellmigration • Rank 3.9 • Science 77%

Analysis of cell migration in Igor Pro

forestecology • Rank 3.9 • Science 77%

forestecology R package of Methods and Data for Forest Ecology Model Fitting and Assessment

greedysub • Rank 3.9 • Science 77%

Reduce redundancy in dataset using greedy algorithms: select subset of data such that no items are closely related

evalica • Rank 13.9 • Science 67%

Evalica, your favourite evaluation toolkit

openmc • Rank 13.9 • Science 67%

OpenMC Monte Carlo Code

findpeaks • Rank 16.8 • Science 64%

The detection of peaks and valleys in a 1d-vector or 2d-array (image)

rlberry • Rank 13.8 • Science 67%

An easy-to-use reinforcement learning library for research and education.

skytag • Rank 3.8 • Science 77%

Annotate transient sources or galaxies with the percentage credibility region they reside within on a given HealPix sky map.

kornia • Rank 29.8 • Science 51%

🐍 Geometric Computer Vision Library for Spatial AI

clifford • Rank 16.8 • Science 64%

Geometric Algebra for Python

ImSwitch — Peer-reviewed • Rank 3.8 • Science 77%

ImSwitch: Generalizing microscope control in Python - Published in JOSS (2021)

marketlib • Rank 3.8 • Science 77%

Project to model the trading of energy to different markets using various power plant models

2021-data-and-software-class • Rank 3.8 • Science 77%

Material and script for the data and software class.

pygeoutils • Rank 13.8 • Science 67%

A part of HyRiver software stack for handling geospatial data manipulations

felupe • Rank 13.8 • Science 67%

:mag: finite element analysis for continuum mechanics of solid bodies

pyriemann • Rank 21.8 • Science 59%

Machine learning for multivariate data through the Riemannian geometry of positive definite matrices in Python

egglog • Rank 26.8 • Science 54%

egraphs + datalog!

MSnbase • Rank 21.7 • Science 59%

Base Classes and Functions for Mass Spectrometry and Proteomics

class-resolver • Rank 16.7 • Science 64%

🔍 Lookup classes and instantiate them with style

thinkmatch • Rank 8.7 • Science 72%

A research protocol for deep graph matching.

pynhd • Rank 13.7 • Science 67%

A part of HyRiver software stack that provides access to NHDPlus data through web services

mmcv • Rank 26.7 • Science 54%

OpenMMLab Computer Vision Foundation

missforest • Rank 13.7 • Science 67%

Arguably the best missing values imputation method.

crit • Rank 3.7 • Science 77%

A tool for automating Rewriting Induction (RI) for Logically Constrained Term Rewriting Systems (LCTRSs)

dashboard • Rank 3.7 • Science 77%

Dashboard: Analysis of pedestrian dynamics based on trajectory files

pytorch-cinic • Rank 3.7 • Science 77%

Small utility package providing easy-install dataloader for https://github.com/BayesWatch/cinic-10#data-loading

chemprop • Rank 21.7 • Science 59%

Message Passing Neural Networks for Molecule Property Prediction

Measurements • Rank 16.7 • Science 64%

Error propagation calculator and library for physical measurements. It supports real and complex numbers with uncertainty, arbitrary precision calculations, operations with arrays, and numerical integration.

noisereduce • Rank 21.6 • Science 59%

Noise reduction in python using spectral gating (speech, bioacoustics, audio, time-domain signals)

org.soot-oss • Rank 13.6 • Science 67%

A new version of Soot with a completely overhauled architecture

inseq • Rank 13.6 • Science 67%

Interpretability for sequence generation models 🐛 🔍

cool-seq-tool • Rank 13.6 • Science 67%

effector • Rank 26.6 • Science 54%

Business logic with ease ☄️

geoheat-gb • Rank 3.6 • Science 77%

GeoHeat-GB: A geospatial power systems planning model for heat electrification in Britain

reactant • Rank 5.6 • Science 75%

grlp • Rank 3.6 • Science 77%

Long-profile evolution of gravel-bed rivers

multilang-probe • Rank 3.6 • Science 77%

A solution to detect languages and type characters in a multilingual setting.

magika • Rank 26.5 • Science 54%

Detect file content types with deep learning

snakemake-workflow-fermi-lat • Rank 3.5 • Science 77%

A Snakemake workflow for Fermi-LAT data reduction

patientmatcher • Rank 3.5 • Science 77%

A MatchMaker Exchange server

disba • Rank 13.5 • Science 67%

Numba-accelerated computation of surface wave dispersion

NeuralPDE • Rank 16.5 • Science 64%

Physics-Informed Neural Networks (PINN) Solvers of (Partial) Differential Equations for Scientific Machine Learning (SciML) accelerated simulation

JuMP • Rank 21.5 • Science 59%

Modeling language for Mathematical Optimization (linear, mixed-integer, conic, semidefinite, nonlinear)

mcfly • Rank 13.5 • Science 67%

A deep learning tool for time series classification and regression

proposal • Rank 13.5 • Science 67%

Monte Carlo Simulation propagating charged Leptons through Media as C++ Library

cantera • Rank 21.5 • Science 59%

Chemical kinetics, thermodynamics, and transport tool suite

ivy • Rank 26.5 • Science 54%

Convert Machine Learning Code Between Frameworks

translator-openpredict • Rank 8.5 • Science 72%

🔮🐍 A package to help serve predictions of biomedical concepts associations as Translator Reasoner API