ionmob • Rank 7.8 • Science 77%

An open-source prediction framework for peptide ion collision cross section (CCS) values with python.

Sundials • Rank 17.8 • Science 67%

Julia interface to Sundials, including a nonlinear solver (KINSOL), ODE's (CVODE and ARKODE), and DAE's (IDA) in a SciML scientific machine learning enabled manner

fooof • Rank 17.8 • Science 67%

Parameterizing neural power spectra into periodic & aperiodic components.

rowan • Rank 17.8 • Science 67%

A Python package for working with quaternions.

matsciml • Rank 7.8 • Science 77%

Open MatSci ML Toolkit is a framework for prototyping and scaling out deep learning models for materials discovery supporting widely used materials science datasets, and built on top of PyTorch Lightning, the Deep Graph Library, and PyTorch Geometric.

EpiEstim • Rank 17.8 • Science 67%

A tool to estimate time varying instantaneous reproduction number during epidemics

Diversity • Rank 7.8 • Science 77%

Julia package for diversity measurement

mdla • Rank 7.8 • Science 77%

Multivariate Dictionary Learning Algorithm

Zygote • Rank 20.8 • Science 64%

21st century AD

crosstl • Rank 7.8 • Science 77%

Universal Programming Language & Translator

kubeflow-katib • Rank 20.7 • Science 64%

Automated Machine Learning on Kubernetes

pybliometrics • Rank 17.7 • Science 67%

Python-based API-Wrapper to access Scopus

hyppo • Rank 20.7 • Science 64%

Python package for multivariate hypothesis testing

demerge • Rank 9.7 • Science 75%

:truck: DESHIMA merge code for observed datasets

pycopancore • Rank 7.7 • Science 77%

reference implementation of the copan:CORE World-Earth modelling framework

UncertaintyQuantification • Rank 7.7 • Science 77%

Uncertainty Quantification in Julia

georinex • Rank 17.7 • Science 67%

Python RINEX 2 / 3 NAV / OBS / sp3 reader & batch convert to HDF5 with C-like speed

rf-detr • Rank 20.7 • Science 64%

RF-DETR is a real-time object detection model architecture developed by Roboflow, SOTA on COCO and designed for fine-tuning.

pyquarc • Rank 7.7 • Science 77%

The pyQuARC tool reads and evaluates metadata records with a focus on the consistency and robustness of the metadata. pyQuARC flags opportunities to improve or add to contextual metadata information in order to help the user connect to relevant data products. pyQuARC also ensures that information common to both the data product and the file-level metadata are consistent and compatible. pyQuARC frees up human evaluators to make more sophisticated assessments such as whether an abstract accurately describes the data and provides the correct contextual information. The base pyQuARC package assesses descriptive metadata used to catalog Earth observation data products and files. As open source software, pyQuARC can be adapted and customized by data providers to allow for quality checks that evolve with their needs, including checking metadata not covered in base package.

CrystalNets • Rank 7.7 • Science 77%

A julia package for the manipulation of crystal net representations and topology

neddy • Rank 7.7 • Science 77%

CL-util to query the NASA/IPAC Extragalactic Database (NED)

pypsa-fes • Rank 7.7 • Science 77%

A model that optimises investment and operation, and incorporates flexibility domestic demand flexibility to model scenarios for Great Britain's future energy system.

octotiger • Rank 7.7 • Science 77%

Astrophysics program simulating the evolution of star systems based on the fast multipole method on adaptive Octrees

matplotx • Rank 17.6 • Science 67%

:bar_chart: More styles and useful extensions for Matplotlib

biorad • Rank 7.6 • Science 77%

R package for analysis and visualisation of biological signals in weather radar data

cupy • Rank 30.6 • Science 54%

NumPy & SciPy for GPU

https://github.com/bluebrain/tmd • Rank 12.6 • Science 72%

A python package for the topological analysis of neurons.

potential • Rank 9.6 • Science 75%

An R package to compute the potential model as defined by Stewart (1941).

nexus • Rank 7.6 • Science 77%

Experimental tensor-typed deep learning

lizard • Rank 25.6 • Science 59%

A simple code complexity analyser without caring about the C/C++ header files or Java imports, supports most of the popular languages.

OpenSkill — Peer-reviewed • Rank 17.5 • Science 67%

OpenSkill: A faster asymmetric multi-team, multiplayer rating system - Published in JOSS (2024)

rsmine • Rank 7.5 • Science 77%

A Python package for efficient optimisation of real-space renormalization group transformations using Tensorflow.

ffta • Rank 7.5 • Science 77%

Fast Free Transient Analysis of atomic force microscopy data

dcor • Rank 17.5 • Science 67%

Distance correlation and related E-statistics in Python

Express • Rank 7.5 • Science 77%

Express: a high-level, extensible workflow framework for accelerating ab initio calculations for the materials science community

transposonmapper • Rank 7.5 • Science 77%

This repository contains the code for the transposonmapper package to map the transposons from the SATAY sequencing data.

adapt-diagnostics • Rank 9.5 • Science 75%

A package for designing activity-informed nucleic acid diagnostics for viruses.

theseus-ai • Rank 20.5 • Science 64%

A library for differentiable nonlinear optimization

nipype • Rank 25.5 • Science 59%

Workflows and interfaces for neuroimaging packages

cutandrun • Rank 7.5 • Science 77%

Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.

solidspy • Rank 7.5 • Science 77%

2D-Finite Element Analysis with Python

miepython • Rank 7.4 • Science 77%

Mie scattering of light by perfect spheres

chromatic_tda • Rank 7.4 • Science 77%

Tool to compute six-packs of persistence diagrams for chromatic point clouds [packaged on PyPI]

aiida-spirit • Rank 7.4 • Science 77%

AiiDA plugin for the spirit code

RangeEnclosures • Rank 7.4 • Science 77%

Enclosures of real-valued functions in Julia

optivorbis • Rank 17.4 • Science 67%

🗜️ Library and application for lossless, format-preserving, two-pass optimization and repair of Vorbis data, reducing its size without altering any audio information.

worcs • Rank 17.4 • Science 67%

Rstudio project template and convenience functions for the Workflow for Open Reproducible Code in Science (WORCS)

ekpmeasure • Rank 7.4 • Science 77%

Repository of analysis and computer control code for various experiments. Analysis module is designed to help the researcher wrangle large amounts of meta data

phaser • Rank 30.4 • Science 54%

Phaser is a fun, free and fast 2D game framework for making HTML5 games for desktop and mobile web browsers, supporting Canvas and WebGL rendering.

ml-pca • Rank 17.4 • Science 67%

Principal component analysis

madrat • Rank 17.4 • Science 67%

R package | May All Data be Reproducible and Transparent (MADRaT)

macpan2 • Rank 7.4 • Science 77%

Tools for building and calibrating compartmental models of infectious disease.

oumi • Rank 20.3 • Science 64%

Easily fine-tune, evaluate and deploy gpt-oss, Qwen3, DeepSeek-R1, or any open source LLM / VLM!

mhcquant • Rank 7.3 • Science 77%

Identify and quantify MHC eluted peptides from mass spectrometry raw data

Container Tree — Peer-reviewed • Rank 7.3 • Science 77%

Container Tree: Software to Model Container Filesystems, Packages, and Inheritance - Published in JOSS (2019)

pydlr • Rank 7.3 • Science 77%

Library for discrete Lehmann representation of imaginary time Green's functions

collapse • Rank 20.3 • Science 64%

Advanced and Fast Data Transformation in R

pythonnumericaldemos • Rank 7.3 • Science 77%

Well-documented Python demonstrations for spatial data analytics, geostatistical and machine learning to support my courses.

imagezmq • Rank 17.3 • Science 67%

A set of Python classes that transport OpenCV images from one computer to another using PyZMQ messaging.

py4dstem • Rank 17.3 • Science 67%

pyspeckle • Rank 7.3 • Science 77%

Creation and Analysis of Laser Speckle

nlohmann-json • Rank 30.3 • Science 54%

JSON for Modern C++

lidarwind • Rank 7.3 • Science 77%

Wind retrievals for the WindCube lidar

best-of-ps • Rank 7.2 • Science 77%

🏆 A weekly updated ranked list of popular open-source libraries and tools for Power System Analysis.

scikit-image • Rank 35.2 • Science 49%

Image processing in Python

articledownloader • Rank 12.2 • Science 72%

Uses publisher APIs to programmatically retrieve scientific journal articles for text mining.

pycortex • Rank 17.2 • Science 67%

Pycortex is a python-based toolkit for surface visualization of fMRI data

re-frame • Rank 30.2 • Science 54%

A ClojureScript framework for building user interfaces, leveraging React

rockfinder • Rank 7.2 • Science 77%

A python package and command-line suite to generate solar-system body ephemerides and to determine if specific transient detections are in fact known asteroids

ModelingToolkit • Rank 20.2 • Science 64%

An acausal modeling framework for automatically parallelized scientific machine learning (SciML) in Julia. A computer algebra system for integrated symbolics for physics-informed machine learning and automated transformations of differential equations

cmip6_cvs • Rank 7.1 • Science 77%

Controlled Vocabularies (CVs) for use in CMIP6

irl-imitation • Rank 7.1 • Science 77%

Implementation of Inverse Reinforcement Learning (IRL) algorithms in Python/Tensorflow. Deep MaxEnt, MaxEnt, LPIRL

magnets • Rank 7.1 • Science 77%

A Python package to aggregate and reduce water distribution network models

OUTRIDER • Rank 17.1 • Science 67%

OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data

mmtrack • Rank 20.1 • Science 64%

OpenMMLab Video Perception Toolbox. It supports Video Object Detection (VID), Multiple Object Tracking (MOT), Single Object Tracking (SOT), Video Instance Segmentation (VIS) with a unified framework.

mispr • Rank 7.1 • Science 77%

A software for automating materials science computations

river • Rank 25.1 • Science 59%

🌊 Online machine learning in Python

codecarbon • Rank 25.1 • Science 59%

Track emissions from Compute and recommend ways to reduce their impact on the environment.

llmonfhir • Rank 7.0 • Science 77%

A Demonstration using LLMs to Explain Health Records

open-grid-emissions • Rank 7.0 • Science 77%

Tools for producing high-quality hourly generation and emissions data for U.S. electric grids

labelfusion • Rank 7.0 • Science 77%

Implementation of various label fusion approaches for medical imaging.

onglai-classify-homologues • Rank 7.0 • Science 77%

OngLai: A cheminformatics algorithm to classify homologous chemical series

o2r-meta • Rank 7.0 • Science 77%

Metadata toolsuite for an extract-map-validate workflow supporting reproducible research

forefire • Rank 7.0 • Science 77%

ForeFire is an open-source code for wildland fire spread models

khroma • Rank 7.0 • Science 77%

Colour Schemes for Scientific Data Visualization - :exclamation: This is a read-only mirror from https://codeberg.org/tesselle/khroma

roux • Rank 7.0 • Science 77%

🧰Convenient functions in Python.

harmonica • Rank 16.9 • Science 67%

Forward modeling, inversion, and processing gravity and magnetic data

curategpt • Rank 6.9 • Science 77%

LLM-driven curation assist tool

sqlmodel • Rank 29.9 • Science 54%

SQL databases in Python, designed for simplicity, compatibility, and robustness.

sidetrack • Rank 8.9 • Science 75%

Simple debug tracing package for Python, with optimization support.

datastew • Rank 8.9 • Science 75%

Python library for intelligent data stewardship using Large Language Model (LLM) embeddings

XGI — Peer-reviewed • Rank 16.9 • Science 67%

XGI: A Python package for higher-order interaction networks - Published in JOSS (2023)

trufflesqueak • Rank 8.9 • Science 75%

A Squeak/Smalltalk VM and Polyglot Programming Environment for the GraalVM.

python-neo • Rank 21.9 • Science 62%

Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats

novu • Rank 29.9 • Science 54%

The open-source notification Inbox infrastructure. E-mail, SMS, Push and Slack Integrations.

siril • Rank 6.9 • Science 77%

This is a mirror, please report bugs to

ai-cli-lib • Rank 6.8 • Science 77%

Add AI capabilities to any readline-enabled command-line program

https://github.com/theislab/cellrank • Rank 16.8 • Science 67%

CellRank: dynamics from multi-view single-cell data

secat • Rank 6.8 • Science 77%

Size-Exclusion Chromatography Algorithmic Toolkit

nvflare • Rank 19.8 • Science 64%

NVIDIA Federated Learning Application Runtime Environment