beditor
A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more
crisprseq
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).
macrophage-regulation
Integrated time-series analysis and high-content CRISPR screening delineate the dynamics of macrophage immune regulation
https://github.com/althonos/diced
A Rust reimplementation of the MinCED method for identifying CRISPRs in full or assembled genomes.
CRISPRball
An interactive exploration/visualization platform to help you lift the fog from your CRISPR analyses.
crisprDesign
Comprehensive design of CRISPR gRNAs for nucleases and base editors
crispresso
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
gemini
GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens
crisprVerse
Collection of R packages that work in harmony for CRISPR gRNA design
https://github.com/cancerit/pycroquet
python Crispr Read to Oligo QUantification and Evaluation Tool
scigrade
SciGrade is an online web-tool that allows users to mark and assist in gRNA+Primer generation.
https://github.com/czbiohub-sf/crispycrunch
Web app for CRISPR experiment setup and analysis
https://github.com/bmascat/rna-seq-proteomics-pipeline
Multi-omics analysis of LFQ proteomics and transcriptomics of an ALMS1 gene knockout cell model after TGF-B pathway stimulation.
https://github.com/acvill/crisprviewr
an R package for repairing, comparing, and visualizing CRISPRs across environmental datasets
https://github.com/babinyurii/sgrna-mismatch-activity
predicting sgRNA mismatch activity using keras