Wakeflow
Wakeflow: A Python package for semi-analytic models of planetary wakes - Published in JOSS (2023)
Utopia
Utopia: A Comprehensive and Collaborative Modeling Framework for Complex and Evolving Systems - Published in JOSS (2020)
SynxFlow
SynxFlow: A GPU-accelerated Python package for multi-hazard simulations - Published in JOSS (2025)
remBoot
remBoot: An R package for Random Encounter Modelling - Published in JOSS (2017)
oemof.solph
A model generator for energy system modelling and optimisation (LP/MILP).
simpeg
Simulation and Parameter Estimation in Geophysics - A python package for simulation and gradient based parameter estimation in the context of geophysical applications.
road2citygml3
Guideline for modelling roads and the streetspace within semantic 3D city models using the international OGC standard City Geography Markup Language (CityGML) version 3.0.
pypsa-fes
A model that optimises investment and operation, and incorporates flexibility domestic demand flexibility to model scenarios for Great Britain's future energy system.
3286b92f-4fae-4cc6-a29e-e408bc844542
Learning the Underlying Physics of a Simulation Model of the Ocean's Temperature
duqtools
Dynamic uncertainty quantification for Tokamak reactor simulations modelling
pyglotaran
A Python library for Global and Target Analysis of time-resolved spectroscopy data
ratinabox
A python package for simulating movement and spatial cell types (e.g. place cells, grid cells) in continuous environments.
dantro
dantro is a Python package to handle, transform, and visualize hierarchically structured data. Docs @ https://dantro.readthedocs.io — NOTE: This repository is a READ-ONLY-MIRROR of the actual development repository; for open issues and MRs, see there:
b34facfa-cea8-48f5-89f6-f11ce00812a9
Showcasing a deep learning model for detecting floating objects
HRDS
HRDS: A Python package for hierarchical raster datasets - Published in JOSS (2019)
ChaProEV
This repository contains the ChaProEV (Charging Profiles of Electric Vehicles) model.
sbml2julia
A tool to for optimizing parameters of ordinary differential equation (ODE) models. SBML2Julia translates a model from SBML/PEtab format into Julia for Mathematical Programming (JuMP), performs the optimization task and returns the results.
emg3d
emg3d: A multigrid solver for 3D electromagnetic diffusion - Published in JOSS (2019)
kinetics
Python package for modelling enzyme reactions using Monte carlo sampling from parameter distributions
iesopt.jl
IESopt (Integrated Energy System Optimization) is a modeling and optimization framework for integrated energy systems.
phd
PhD thesis titled: Open Source Blockchain Software Health: A Theoretical Framework
mboost
Boosting algorithms for fitting generalized linear, additive and interaction models to potentially high-dimensional data. The current relase version can be found on CRAN (http://cran.r-project.org/package=mboost).
https://github.com/btschwertfeger/growth-model-website
Website with adjustable visualizations to demonstrate an atlantic cod growth model
https://github.com/bluebrain/bluepyemodel
Blue Brain Python Electrical Modeling Pipeline
accelstab
This package utilises the Šesták–Berggren equation alongside the Arrhenius equation to make a simple and consistent way for a user to carry out the calculations and predictions required by accelerated stability studies.
enflow
⚡ Open-source Python framework for modelling sequential decision problems in the energy sector
lossrx
An R package, plumber API, database, and Shiny App for Actuarial Loss Development and Reserving Workflows.
https://github.com/bluebrain/libsonata
A python and C++ interface to the SONATA format
findcpcli
findCP CLI package - find ChokePoint reactions in genome-scale metabolic models
https://github.com/bluegreen-labs/r_tutorials
R tutorials in processing and visualization of environmental data
https://github.com/bioatmosphere/abm
Aggregate-based model (ABM) of soil systems comprising soil aggregates as biogeochemical reactors of different sizes
https://github.com/biodt/bfm-model
Multi-modal Foundation Model for Biodiversity dynamics forecasting
med
Autonomously driving equation discovery, from the micro to the macro, from laptops to supercomputers.
lythesis
My PhD thesis about modelling lymphatic metastatic progression in head and neck cancer
3pnn
Code and source data used in the article "3D printed biomimetic cochleae and machine learning co-modelling provides clinical informatics for cochlear implant patients" (Lei et al. Nature Communications, 2021). The code is used for modelling the relationship between electric field imaging (EFI) profiles and the electro-anatomical features of cochleae using a multilayer perceptron (MLP) artificial neural network (NN) model.
ruvpy
Reference implementation of the Relative Utility Value metric for forecast value assessment
metrics_for_individual_tree_mortality_models
How performance metric choice influences individual tree mortality model selection - code and data
spectral_properties_supplement
Supplementary material for the paper "Spectral properties of 441 radio pulsars".
https://github.com/aariq/python-modeling
homeworks and stuff from http://www.ece.tufts.edu/ee/194MSO/
https://github.com/aida-ugent/maxentcomb
Source code for the paper "Block-Approximated Exponential Random Graphs" (DSAA2020)
rzss-flapper
Statistical modelling for Cole et al. (in prep). Physiological responses to capture, handling and tagging in flapper skate (Dipturus intermedius).
https://github.com/augustinmortier/aer-ifs
Compute aerosol properties maps from ECMWF IFS model data
https://github.com/calliope-project/ec_modules
Make energy model workflows easy as 🥧!
lymph-model
Python package for statistical modelling of lymphatic metastatic spread in head & neck cancer.
39d9c177-11da-41b2-9b64-63f4c1c834b3
Variational data assimilation with deep prior
petab
PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
93463cac-471a-469d-ad52-0514fd9b67f2
Detection and attribution of climate change using deep learning
koriabo-model
This repository contain the code of radiocarbon modelling in R, the raw data of radiocarbon dates, and a web map with the location of dated sites associated with Koriabo settlements or trade finds.