kramersmoyal — Peer-reviewed • Rank 9.8 • Science 93%

kramersmoyal: Kramers--Moyal coefficients for stochastic processes - Published in JOSS (2019)

PyFPT — Peer-reviewed • Rank 7.1 • Science 95%

PyFPT: A Python package for first-passage times - Published in JOSS (2023)

CancerSim — Peer-reviewed • Rank 3.6 • Science 98%

CancerSim: A Cancer Simulation Package for Python 3 - Published in JOSS (2020)

uqpy • Rank 15.8 • Science 67%

UQpy (Uncertainty Quantification with python) is a general purpose Python toolbox for modeling uncertainty in physical and mathematical systems.

JumpProcesses • Rank 17.6 • Science 59%

Build and simulate jump equations like Gillespie simulations and jump diffusions with constant and state-dependent rates and mix with differential equations and scientific machine learning (SciML)

StochasticDiffEq • Rank 18.4 • Science 54%

Solvers for stochastic differential equations which connect with the scientific machine learning (SciML) ecosystem

osemosys_pulp • Rank 4.9 • Science 67%

OSeMOSYS_PuLP: A Stochastic Modelling Framework for Long-Term Energy Systems Modeling

fplanck • Rank 8.6 • Science 59%

Numerically solve the Fokker-Planck equation in N dimensions

DiffEqFinancial • Rank 10.0 • Science 54%

Differential equation problem specifications and scientific machine learning for common financial models

https://github.com/dmetivie/stochasticweathergenerators.jl • Rank 2.4 • Science 49%

A Julia package to define, fit and generate from Stochastic Weather Generators

g2s • Rank 12.7 • Science 26%

A flexible MPS framework

sRACIPE • Rank 10.3 • Science 10%

sRACIPE for bioconductor

SpiDy.jl — Peer-reviewed • Science 93%

SpiDy.jl: open-source Julia package for the study of non-Markovian stochastic dynamics - Published in JOSS (2024)

https://github.com/csinva/biophysical-threshold-simulations • Science 13%

Simulations for characterizing stochastic threshold in biophysical neurons.

https://github.com/cjabradshaw/whalesharkenergeticsmodel • Science 23%

A stochastic energetics model to estimate the probability of meeting the energetic needs of whale sharks at a food-provisioned tourist site

estimate-emergence-from-data • Science 67%

Code for reproducing the results from the preprint "Using early detection data to estimate the date of emergence of an epidemic outbreak".

https://github.com/aresio/procell • Science 33%

Stochastic simulation of cell populations proliferation

https://github.com/ashtonsbradley/anzsup19_stochastic • Science 10%