DrWatson
DrWatson: the perfect sidekick for your scientific inquiries - Published in JOSS (2020)
ZodiPy
ZodiPy: A Python package for zodiacal light simulations - Published in JOSS (2024)
HW2D
HW2D: A reference implementation of the Hasegawa-Wakatani model for plasma turbulence in fusion reactors - Published in JOSS (2023)
ytree
ytree: A Python package for analyzing merger trees - Published in JOSS (2019)
rsimsum
rsimsum: Summarise results from Monte Carlo simulation studies - Published in JOSS (2018)
MLMOD
MLMOD: Machine Learning Methods for Data-Driven Modeling in LAMMPS - Published in JOSS (2023)
reachabilityanalysis.jl
Computing reachable states of dynamical systems in Julia
ControlSystems
A Control Systems Toolbox for Julia
idpflex
idpflex: Analysis of Intrinsically Disordered Proteins by Comparing Simulations to Small Angle Scattering Experiments - Published in JOSS (2018)
swift
Modern astrophysics and cosmology particle-based code. Mirror of gitlab developments at https://gitlab.cosma.dur.ac.uk/swift/swiftsim
PowerSimulations.jl
Julia for optimization simulation and modeling of PowerSystems. Part of the Scalable Integrated Infrastructure Planning Initiative at the National Renewable Energy Lab.
nmrformd
NMRforMD is a python script for the calculation of NMR relaxation time T1 and T2 from molecular dynamics trajectory file.
neutronics-workshop
A workshop covering a range of fusion relevant analysis and simulations with OpenMC, DAGMC, Paramak and other open source fusion neutronics tools
vice
A python package designed to run numerical simulations of galactic chemical evolution
entropy-core-problem
Repository for suppelementary material from my publications on the entropy core problem
https://github.com/google-deepmind/simulation_streams
Simulation Streams is a programming paradigm designed to efficiently control and leverage Large Language Models (LLMs) for complex, dynamic simulations and agentic workflows.
https://github.com/bio-phys/capriqorn
Capriqorn: CAlculation of P(R) and I(Q) Of macRomolecules in solutioN
https://github.com/cta-observatory/protopipe
Prototype data analysis pipeline for the Cherenkov Telescope Array Observatory
squid
Statistical Quantification of Individual Differences: an simulation tool for understanding multi-level phenotypic data in linear mixed models
gcmicrolensing
Tools for simulating gravitational microlensing events with single, binary, and triple lens systems. This package is under active development.
https://github.com/rieder/amuse-ekster
Ekster is an AMUSE module for simulations of embedded stellar regions.
traitblender
Blender addon for simulating raw datasets under known evolutionary models
aem-lk-v2
MatLab scripts for the Automated Extraction of Kinetic Inductance from Sonnet. This is the latest version of AEM Lk and works with all version of Sonnet up to version 18.
awesome-robotics-3d
A curated list of 3D Vision papers relating to Robotics domain in the era of large models i.e. LLMs/VLMs, inspired by awesome-computer-vision, including papers, codes, and related websites
https://github.com/angrymaciek/warlock
Warlock is a snakemake workflow to spawn multiple demons (deme-based oncology models) as jobs running around on a cluster environment 😈😈
https://github.com/danielvartan/abm-study-group-pres-2
🔮🔄 Presentation for the 6th Meeting of the Agent-Based Model Study Group at University of São Paulo
https://github.com/bgmeulem/reconstruct_carto
Reconstructs a simulatable 3D mesh from in-vivo CARTO mapping data
foodclim
🍽️ Food Yield Responses to Climate Change in NetLogo
https://github.com/booleancube/chaos-theory
Playing around with chaos theory simulations. Creating equilibrium graphs and visualizing the logistic maps.
hookworm_anaemia_statistical_model
Statistical model to simulate individual haemoglobin concentrations in human hosts as a function of observed egg counts quantifying hookworm infection. The model employs latent variables to reproduce an underlying worm burdens distribution in the population. The model after calibration is used to predict the prevalence of anaemia that can be attributed to hookworm infection.
https://github.com/danielvartan/primer
👾 Exploring tools provided by the Primer YouTube Channel in Godot
amuse
Astrophysical Multipurpose Software Environment. This is the main repository for AMUSE
https://github.com/barakhirshberg/molecularsimulations
Course notes for Molecular Simulations 0351-4057, Tel Aviv University
https://github.com/danielvartan/scxnutri-pres
🧒🏽🌍 Presentation for the Systems Thinking and Complex Systems in Public Health Nutrition course at the Faculty of Public Health, University of São Paulo
https://github.com/amberlee2427/gullsplanets
Fast Python scripts that generate millions of planet entries for Gulls input catalogs, in seconds
logoclim
⛅ WorldClim in NetLogo
https://github.com/danielvartan/henrique
🌳🌦️ Initial Work on a Percolation Model Using NetLogo
https://github.com/danielvartan/resiclima-pres
🕹️🤖 Presentation for the 2024 RESICLIMA Meeting