papaja
papaja (Preparing APA Journal Articles) is an R package that provides document formats to produce complete APA manuscripts from RMarkdown-files (PDF and Word documents) and helper functions that facilitate reporting statistics, tables, and plots.
ncse-seminar-2022
National Centre for Statistical Ecology seminar, Feb 9th, 2022
ezknitr
ezknitr: Avoid the Typical Working Directory Pain When Using 'knitr' - Published in JOSS (2016)
https://github.com/HugoBlox/hugo-blox-builder
⚡ Hugo Blox: Markdown sites in minutes. Academic/resume/lab/portfolio for AI researchers & startups. Premium templates. Deploy to GitHub Pages now in 1-click 👇
teaching_reproducible_science_r
Material and notes for teaching reproducible science in R
lingglosses
R package that helps to render interlinear glossed linguistic examples in html rmarkdown documents and then semi-automatically compiles the glosses list
neotoma_lakes
A repository for managing the matching of lake data between national hydrographic databases and Neotoma records.
https://github.com/amzoss/rvis-dm2019
A two-day workshop on visualization in R using ggplot2, plotly, flexdashboards, and shiny
explore
R package that makes basic data exploration radically simple (interactive data exploration, reproducible data science)
https://github.com/annakrystalli/literate-programming
Materials associated with workshop on literate programming in Rmarkdown @ the University of Sheffield as part of the Bioinformatics Core "Introduction to R" workshop
countdown
⏲ countdown timer for slides and HTML docs in Quarto, R Markdown, and Shiny
regionReport
Generate HTML report for a set of genomic regions or DESeq2/edgeR results
bioCancer
:cancer: :free: A Shiny App for Interactive Multi-OMICS Cancer Data Visualization and analysis
intro-curriculum-r
Custom curriculum for teaching R, the Unix Shell, & Git with an integrated workflow and reproducible research practices.
rstudiopymolpysnips
PyMOL snippet library is written in Python for use in RStudio via the R reticulate package and the PyMOL Python API.
markdownreports
Type Less, Plot More. Create and auto-annotated and -saved (base) plots with very little code, and write (markdown) reports easily from your R scripts.
https://github.com/carlganz/csuntemplate
R Markdown template for CSUN Master Thesis
https://github.com/datacarpentry/rr-literate-programming
Repository for lesson materials on Literate Programming
asreview_irr
Code to automatically produce a report from ASReview on inter-rater reliability during literature screening.
thesisiscode
A repository for the Geological Society of America 2020 & 2021 Workshops - Your Thesis is Code
inbomd_examples
Examples files for https://www.github.com/inbo/inbomd. See the website for the rendered versions.
https://github.com/cwwhitney/rmarkdown_template
Template for RMarkdown documents
https://github.com/danilofreire/rmarkdown-templates
A collection of personal templates for RMarkdown