shapr
shapr: An R-package for explaining machine learning models with dependence-aware Shapley values - Published in JOSS (2019)
datastructures
datastructures: An R package for organisation and storage of data - Published in JOSS (2018)
BASiCS
BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version
RcppArmadillo
Rcpp integration for the Armadillo templated linear algebra library
epidemics
A library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, and vaccination regimes, to compose epidemic scenarios.
joineRML
R package for fitting joint models to time-to-event data and multivariate longitudinal data
roll
Fast and efficient computation of rolling and expanding statistics for time-series data.
polyfreqs
polyfreqs: an R package for Bayesian population genomics in autopolyploids
https://github.com/csiro-hydroinformatics/c-interop
Reusable functions for marshalling data between C, C++ and other programming languages
FSelectorRcpp
Rcpp (free of Java/Weka) implementation of FSelector entropy-based feature selection algorithms with a sparse matrix support
scanstatistics
scanstatistics: space-time anomaly detection using scan statistics - Published in JOSS (2018)
RcppEnsmallen
Rcpp integration for the Ensmallen templated C++ mathematical optimization library
roptim
General Purpose Optimization in R using C++: provides a unified C++ wrapper to call functions of the algorithms underlying the optim() solver
simts
:hourglass_flowing_sand: Time Series Tools R package provides a series of tools to simulate, plot, estimate, select and forecast different time series models.
metabom8
R library for 1D NMR metabolomics workflows. Features include Bruker NMR data import and preprocessing, statistical modeling (PCA, O-PLS), metabolite identification, and visualization (ggplot2, plotly). Critical functions are implemented in C++ using linear algebra libraries (Armadillo, Eigen) to enhance runtime performance.
finalsize
R package to calculate the final size of an SIR epidemic in populations with heterogeneity in social contacts and disease susceptibility
https://github.com/corybrunson/rcpplong
illustrating and testing long int behavior in Rcpp
lingdist
lingdist: A Fast Linguistic Distance and Alignment Computation R Package
SLmetrics
A high-performance R :package: for supervised and unsupervised machine learning evaluation metrics witten in 'C++'.
daedalus
[UNDER DEVELOPMENT] R package implementing the DAEDALUS model for projecting and optimising health, social, and economic costs of a pandemic.
hmcdm
R package for fitting hidden Markov cognitive diagnosis models for learning.