Scientific Software
Updated 7 months ago

sbi reloaded — Peer-reviewed • Rank 20.0 • Science 100%

sbi reloaded: a toolkit for simulation-based inference workflows - Published in JOSS (2025)

Scientific Software
Updated 7 months ago

exoplanet — Peer-reviewed • Rank 15.7 • Science 100%

exoplanet: Gradient-based probabilistic inference for exoplanet data & other astronomical time series - Published in JOSS (2021)

Scientific Software
Updated 7 months ago

PyAutoFit — Peer-reviewed • Rank 15.2 • Science 100%

PyAutoFit: A Classy Probabilistic Programming Language for Model Composition and Fitting - Published in JOSS (2021)

Scientific Software
Updated 7 months ago

Generative DAGs as an Interface Into Probabilistic Programming with the R Package causact — Peer-reviewed • Rank 16.5 • Science 95%

Generative DAGs as an Interface Into Probabilistic Programming with the R Package causact - Published in JOSS (2022)

Scientific Software
Updated 7 months ago

InvertibleNetworks.jl — Peer-reviewed • Rank 10.6 • Science 100%

InvertibleNetworks.jl: A Julia package for scalable normalizing flows - Published in JOSS (2024)

Scientific Software
Updated 7 months ago

uravu — Peer-reviewed • Rank 10.4 • Science 100%

uravu: Making Bayesian modelling easy(er) - Published in JOSS (2020)

Scientific Software
Updated 7 months ago

fmcmc — Peer-reviewed • Rank 13.9 • Science 96%

fmcmc: A friendly MCMC framework - Published in JOSS (2019)

Engineering (40%) Economics (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 7 months ago

statsExpressions — Peer-reviewed • Rank 16.3 • Science 93%

statsExpressions: R Package for Tidy Dataframes and Expressions with Statistical Details - Published in JOSS (2021)

Scientific Software
Updated 7 months ago

PyVBMC — Peer-reviewed • Rank 11.1 • Science 98%

PyVBMC: Efficient Bayesian inference in Python - Published in JOSS (2023)

Scientific Software
Updated 7 months ago

bayes-toolbox — Peer-reviewed • Rank 10.4 • Science 98%

bayes-toolbox: A Python package for Bayesian statistics - Published in JOSS (2023)

Earth and Environmental Sciences Economics
Scientific Software · Peer-reviewed
Scientific Software
Updated 7 months ago

ParaMonte — Peer-reviewed • Rank 13.2 • Science 95%

ParaMonte: A high-performance serial/parallel Monte Carlo simulation library for C, C++, Fortran - Published in JOSS (2021)

Scientific Software
Updated 7 months ago

nestcheck — Peer-reviewed • Rank 12.8 • Science 95%

nestcheck: error analysis, diagnostic tests and plots for nested sampling calculations - Published in JOSS (2018)

Scientific Software
Updated 7 months ago

geostan — Peer-reviewed • Rank 12.1 • Science 95%

geostan: An R package for Bayesian spatial analysis - Published in JOSS (2022)

Scientific Software
Updated 7 months ago

pocoMC — Peer-reviewed • Rank 11.9 • Science 95%

pocoMC: A Python package for accelerated Bayesian inference in astronomy and cosmology - Published in JOSS (2022)

Scientific Software
Updated 7 months ago

ChainoPy — Peer-reviewed • Rank 8.9 • Science 98%

ChainoPy: A Python Library for Discrete Time Markov Chain Based Stochastic Analysis - Published in JOSS (2024)

Scientific Software
Updated 7 months ago

GrainLearning — Peer-reviewed • Rank 8.8 • Science 98%

GrainLearning: A Bayesian uncertainty quantification toolbox for discrete and continuum numerical models of granular materials - Published in JOSS (2024)

Political Science Artificial Intelligence and Machine Learning Sociology
Scientific Software · Peer-reviewed
Scientific Software
Updated 7 months ago

BlackBIRDS — Peer-reviewed • Rank 7.5 • Science 98%

BlackBIRDS: Black-Box Inference foR Differentiable Simulators - Published in JOSS (2023)

Artificial Intelligence and Machine Learning (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 7 months ago

approxposterior — Peer-reviewed • Rank 9.8 • Science 95%

approxposterior: Approximate Posterior Distributions in Python - Published in JOSS (2018)

Engineering Computer Science (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 7 months ago

SGMCMCJax — Peer-reviewed • Rank 11.7 • Science 93%

SGMCMCJax: a lightweight JAX library for stochastic gradient Markov chain Monte Carlo algorithms - Published in JOSS (2022)

Mathematics
Scientific Software · Peer-reviewed
Scientific Software
Updated 7 months ago

Maelstrom — Peer-reviewed • Rank 7.0 • Science 95%

Maelstrom: A Python package for identifying companions to pulsating stars from their light travel time variations - Published in JOSS (2020)

Scientific Software
Updated 7 months ago

Chi — Peer-reviewed • Rank 3.8 • Science 98%

Chi: A Python package for treatment response modelling - Published in JOSS (2024)

Scientific Software
Updated 7 months ago

PyCurious — Peer-reviewed • Rank 8.7 • Science 93%

PyCurious: A Python module for computing the Curie depth from the magnetic anomaly. - Published in JOSS (2019)

Mathematics Engineering
Scientific Software · Peer-reviewed
Scientific Software
Updated 7 months ago

PxMCMC — Peer-reviewed • Rank 6.4 • Science 95%

PxMCMC: A Python package for proximal Markov Chain Monte Carlo - Published in JOSS (2023)

Mathematics Earth and Environmental Sciences
Scientific Software · Peer-reviewed
Scientific Software
Updated 7 months ago

perfectns — Peer-reviewed • Rank 6.4 • Science 93%

perfectns: perfect dynamic and standard nested sampling for spherically symmetric likelihoods and priors - Published in JOSS (2018)

Mathematics
Scientific Software · Peer-reviewed
Updated 6 months ago

IntrinsicTimescales.jl: A Julia package to estimate intrinsic (neural) timescales (INTs) from time-series data • Rank 4.2 • Science 93%

IntrinsicTimescales.jl: A Julia package to estimate intrinsic (neural) timescales (INTs) from time-series data - Published in JOSS (2025)

Scientific Software
Updated 7 months ago

Fitting a Gamma-Gompertz survival model to capture-recapture data collected on free-ranging animal populations — Peer-reviewed • Rank 1.4 • Science 95%

Fitting a Gamma-Gompertz survival model to capture-recapture data collected on free-ranging animal populations - Published in JOSS (2018)

Artificial Intelligence and Machine Learning (40%) Earth and Environmental Sciences (40%) Medicine (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 7 months ago

GPJax — Peer-reviewed • Rank 17.6 • Science 77%

GPJax: A Gaussian Process Framework in JAX - Published in JOSS (2022)

Mathematics Earth and Environmental Sciences
Scientific Software · Peer-reviewed
Scientific Software
Updated 7 months ago

RxInfer — Peer-reviewed • Rank 13.6 • Science 77%

RxInfer: A Julia package for reactive real-time Bayesian inference - Published in JOSS (2023)

Updated 7 months ago

genparticlefilters.jl • Rank 6.0 • Science 75%

Building blocks for simple and advanced particle filtering in Gen.

Updated 7 months ago

dynesty • Rank 20.2 • Science 59%

Dynamic Nested Sampling package for computing Bayesian posteriors and evidences

Updated 7 months ago

pigeons.jl • Rank 11.4 • Science 64%

Sampling from intractable distributions, with support for distributed and parallel methods

Scientific Software
Updated 7 months ago

anesthetic — Peer-reviewed • Rank 16.2 • Science 59%

anesthetic: nested sampling visualisation - Published in JOSS (2019)

Mathematics
Scientific Software · Peer-reviewed
Updated 7 months ago

calibr • Rank 0.0 • Science 75%

Parallelized Bayesian calibration of simulations using Gaussian process emulation

Updated 7 months ago

prob-epi • Rank 7.1 • Science 67%

Course materials of "Bayesian Modelling and Probabilistic Programming with Numpyro, and Deep Generative Surrogates for Epidemiology"

Updated 7 months ago

viabel • Rank 9.0 • Science 64%

Efficient, lightweight variational inference and approximation bounds

Updated 7 months ago

harmonic • Rank 13.3 • Science 59%

Machine learning assisted marginal likelihood (Bayesian evidence) estimation for Bayesian model selection

Updated 7 months ago

brms • Rank 22.7 • Science 49%

brms R package for Bayesian generalized multivariate non-linear multilevel models using Stan

Updated 7 months ago

storage-ring-gravitational-wave-observatory • Rank 0.7 • Science 67%

Simulating the detection of millihertz (mHz) gravitational waves (GWs) from astrophysical sources by a Storage Ring Gravitational-wave Observatory (SRGO).

Updated 7 months ago

causalnex • Rank 11.4 • Science 54%

A Python library that helps data scientists to infer causation rather than observing correlation.

Updated 7 months ago

DiffEqBayes • Rank 11.2 • Science 54%

Extension functionality which uses Stan.jl, DynamicHMC.jl, and Turing.jl to estimate the parameters to differential equations and perform Bayesian probabilistic scientific machine learning

Scientific Software
Updated 7 months ago

fgivenx — Peer-reviewed • Rank 5.5 • Science 59%

fgivenx: A Python package for functional posterior plotting - Published in JOSS (2018)

Engineering (40%)
Scientific Software · Peer-reviewed
Updated 7 months ago

multilevelcoda • Rank 10.3 • Science 49%

multilevelcoda R package for Bayesian multilevel compositional data analysis

Updated 7 months ago

SUMMER • Rank 12.9 • Science 46%

SAE Unit/area Models and Methods for Estimation in R

Updated 7 months ago

https://github.com/pyro-ppl/numpyro • Rank 12.6 • Science 46%

Probabilistic programming with NumPy powered by JAX for autograd and JIT compilation to GPU/TPU/CPU.

Updated 7 months ago

hbamr • Rank 8.1 • Science 49%

Hierarchical Bayesian Aldrich-McKelvey Scaling in R via Stan

Updated 7 months ago

environmental-impact-assessment • Rank 1.8 • Science 54%

performs Bayesian inference modeling to scope environmental impact assessments in sociotechnical energy systems

Updated 7 months ago

https://github.com/bilby-dev/bilby • Rank 19.5 • Science 36%

A unified framework for stochastic sampling packages and gravitational-wave inference in Python.

Updated 7 months ago

bnlearn • Rank 17.7 • Science 36%

Python package for Causal Discovery by learning the graphical structure of Bayesian networks. Structure Learning, Parameter Learning, Inferences, Sampling methods.

Updated 7 months ago

bdrc • Rank 15.3 • Science 36%

Fits a discharge rating curve based on the power-law and the generalized power-law from data on paired water elevation and discharge measurements in a given river using a Bayesian hierarchical model as described in Hrafnkelsson et al. (2022)

Updated 7 months ago

https://github.com/biocore/birdman • Rank 4.8 • Science 46%

Bayesian Inferential Regression for Differential Microbiome Analysis

Updated 7 months ago

bayesianreasoning • Rank 8.7 • Science 36%

R package with functions to plot and help understand Positive and Negative Predictive Values, and their relationship with Sensitivity, Specificity and Prevalence.

Updated 7 months ago

https://github.com/juliagaussianprocesses/temporalgps.jl • Rank 8.3 • Science 36%

Fast inference for Gaussian processes in problems involving time. Partly built on results from https://proceedings.mlr.press/v161/tebbutt21a.html

Updated 7 months ago

pcfactorstan • Rank 8.2 • Science 36%

Stan Models for the Paired Comparison Factor Model

Updated 7 months ago

piranha • Rank 3.0 • Science 41%

Scripts for file processing and analysis in phylogenetics and phylogeography

Updated 6 months ago

https://github.com/google-deepmind/pgmax • Rank 6.4 • Science 36%

Loopy belief propagation for factor graphs on discrete variables in JAX

Updated 7 months ago

https://github.com/cbg-ethz/scicone • Rank 5.2 • Science 36%

Single-cell copy number calling and event history reconstruction.

Updated 7 months ago

https://github.com/acerbilab/normalizing-flow-regression • Rank 1.4 • Science 36%

Normalizing Flow Regression for Bayesian Inference with Offline Likelihood Evaluations

Updated 7 months ago

metaBMA • Rank 13.6 • Science 23%

Bayesian Model Averaging for Random and Fixed Effects Meta-Analysis

Updated 7 months ago

https://github.com/cdcgov/ww-inference-model • Rank 6.3 • Science 26%

An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case count data to produce nowcasts and forecasts of both observations

Updated 7 months ago

CMF • Rank 10.7 • Science 20%

R package for finding a joint low-rank representation for a collection of matrices with shared row or column entities.

Updated 7 months ago

bvartools • Rank 15.0 • Science 13%

Functions for Bayesian inference of vector autoregressive and vector error correction models

Updated 7 months ago

https://github.com/ciela-institute/tarp • Rank 4.9 • Science 23%

Coverage tests to check the quality of your posterior estimators.

Updated 7 months ago

https://github.com/daeh/emotionreasoning-cogsci22 • Rank 1.9 • Science 23%

Emotion Reasoning. Models, analyses and data for the 2022 CogSci paper, "Reasoning about the antecedents of emotions: Bayesian causal inference over an intuitive theory of mind"

Updated 7 months ago

statsr • Rank 14.0 • Science 10%

Companion package for the Coursera Statistics with R specialization

Updated 7 months ago

lgpr • Rank 9.9 • Science 13%

R-package for interpretable nonparametric modeling of longitudinal data using additive Gaussian processes. Contains functionality for inferring covariate effects and assessing covariate relevances. Various models can be specified using a convenient formula syntax.

Updated 7 months ago

ffp • Rank 9.2 • Science 13%

Fully Flexible Probabilities for Stress-Testing and Portfolio Construction

Updated 7 months ago

https://github.com/biaslab/ccta2024-bidconvection • Rank 0.0 • Science 13%

Experiments for CCTA 2024 submission on fast Bayesian gray-box identification of convection in heat transfer dynamics.

Updated 7 months ago

hookworm_anaemia_statistical_model • Science 26%

Statistical model to simulate individual haemoglobin concentrations in human hosts as a function of observed egg counts quantifying hookworm infection. The model employs latent variables to reproduce an underlying worm burdens distribution in the population. The model after calibration is used to predict the prevalence of anaemia that can be attributed to hookworm infection.

Updated 7 months ago

posteriorplots.jl • Science 41%

Graphical tools for Bayesian inference and posterior predictive checks

Updated 7 months ago

vibass • Science 26%

R-package for the introductory course on Bayesian inference at the València International Bayesian Summer School