Scientific Software
Updated 6 months ago

sbi reloaded — Peer-reviewed • Rank 20.0 • Science 100%

sbi reloaded: a toolkit for simulation-based inference workflows - Published in JOSS (2025)

Scientific Software
Updated 6 months ago

exoplanet — Peer-reviewed • Rank 15.7 • Science 100%

exoplanet: Gradient-based probabilistic inference for exoplanet data & other astronomical time series - Published in JOSS (2021)

Scientific Software
Updated 6 months ago

PyAutoFit — Peer-reviewed • Rank 15.2 • Science 100%

PyAutoFit: A Classy Probabilistic Programming Language for Model Composition and Fitting - Published in JOSS (2021)

Scientific Software
Updated 6 months ago

Generative DAGs as an Interface Into Probabilistic Programming with the R Package causact — Peer-reviewed • Rank 16.5 • Science 95%

Generative DAGs as an Interface Into Probabilistic Programming with the R Package causact - Published in JOSS (2022)

Scientific Software
Updated 6 months ago

InvertibleNetworks.jl — Peer-reviewed • Rank 10.6 • Science 100%

InvertibleNetworks.jl: A Julia package for scalable normalizing flows - Published in JOSS (2024)

Scientific Software
Updated 6 months ago

uravu — Peer-reviewed • Rank 10.4 • Science 100%

uravu: Making Bayesian modelling easy(er) - Published in JOSS (2020)

Scientific Software
Updated 6 months ago

fmcmc — Peer-reviewed • Rank 13.9 • Science 96%

fmcmc: A friendly MCMC framework - Published in JOSS (2019)

Engineering (40%) Economics (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

statsExpressions — Peer-reviewed • Rank 16.3 • Science 93%

statsExpressions: R Package for Tidy Dataframes and Expressions with Statistical Details - Published in JOSS (2021)

Scientific Software
Updated 6 months ago

PyVBMC — Peer-reviewed • Rank 11.1 • Science 98%

PyVBMC: Efficient Bayesian inference in Python - Published in JOSS (2023)

Scientific Software
Updated 6 months ago

bayes-toolbox — Peer-reviewed • Rank 10.4 • Science 98%

bayes-toolbox: A Python package for Bayesian statistics - Published in JOSS (2023)

Earth and Environmental Sciences Economics
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

ParaMonte — Peer-reviewed • Rank 13.2 • Science 95%

ParaMonte: A high-performance serial/parallel Monte Carlo simulation library for C, C++, Fortran - Published in JOSS (2021)

Scientific Software
Updated 6 months ago

nestcheck — Peer-reviewed • Rank 12.8 • Science 95%

nestcheck: error analysis, diagnostic tests and plots for nested sampling calculations - Published in JOSS (2018)

Scientific Software
Updated 6 months ago

geostan — Peer-reviewed • Rank 12.1 • Science 95%

geostan: An R package for Bayesian spatial analysis - Published in JOSS (2022)

Scientific Software
Updated 6 months ago

pocoMC — Peer-reviewed • Rank 11.9 • Science 95%

pocoMC: A Python package for accelerated Bayesian inference in astronomy and cosmology - Published in JOSS (2022)

Scientific Software
Updated 6 months ago

ChainoPy — Peer-reviewed • Rank 8.9 • Science 98%

ChainoPy: A Python Library for Discrete Time Markov Chain Based Stochastic Analysis - Published in JOSS (2024)

Scientific Software
Updated 6 months ago

GrainLearning — Peer-reviewed • Rank 8.8 • Science 98%

GrainLearning: A Bayesian uncertainty quantification toolbox for discrete and continuum numerical models of granular materials - Published in JOSS (2024)

Political Science Artificial Intelligence and Machine Learning Sociology
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

BlackBIRDS — Peer-reviewed • Rank 7.5 • Science 98%

BlackBIRDS: Black-Box Inference foR Differentiable Simulators - Published in JOSS (2023)

Artificial Intelligence and Machine Learning (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

approxposterior — Peer-reviewed • Rank 9.8 • Science 95%

approxposterior: Approximate Posterior Distributions in Python - Published in JOSS (2018)

Engineering Computer Science (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

SGMCMCJax — Peer-reviewed • Rank 11.7 • Science 93%

SGMCMCJax: a lightweight JAX library for stochastic gradient Markov chain Monte Carlo algorithms - Published in JOSS (2022)

Mathematics
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

Maelstrom — Peer-reviewed • Rank 7.0 • Science 95%

Maelstrom: A Python package for identifying companions to pulsating stars from their light travel time variations - Published in JOSS (2020)

Scientific Software
Updated 6 months ago

Chi — Peer-reviewed • Rank 3.8 • Science 98%

Chi: A Python package for treatment response modelling - Published in JOSS (2024)

Scientific Software
Updated 6 months ago

PyCurious — Peer-reviewed • Rank 8.7 • Science 93%

PyCurious: A Python module for computing the Curie depth from the magnetic anomaly. - Published in JOSS (2019)

Mathematics Engineering
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

PxMCMC — Peer-reviewed • Rank 6.4 • Science 95%

PxMCMC: A Python package for proximal Markov Chain Monte Carlo - Published in JOSS (2023)

Mathematics Earth and Environmental Sciences
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

perfectns — Peer-reviewed • Rank 6.4 • Science 93%

perfectns: perfect dynamic and standard nested sampling for spherically symmetric likelihoods and priors - Published in JOSS (2018)

Mathematics
Scientific Software · Peer-reviewed
Updated 4 months ago

IntrinsicTimescales.jl: A Julia package to estimate intrinsic (neural) timescales (INTs) from time-series data • Rank 4.2 • Science 93%

IntrinsicTimescales.jl: A Julia package to estimate intrinsic (neural) timescales (INTs) from time-series data - Published in JOSS (2025)

Scientific Software
Updated 6 months ago

Fitting a Gamma-Gompertz survival model to capture-recapture data collected on free-ranging animal populations — Peer-reviewed • Rank 1.4 • Science 95%

Fitting a Gamma-Gompertz survival model to capture-recapture data collected on free-ranging animal populations - Published in JOSS (2018)

Artificial Intelligence and Machine Learning (40%) Earth and Environmental Sciences (40%) Medicine (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

GPJax — Peer-reviewed • Rank 17.6 • Science 77%

GPJax: A Gaussian Process Framework in JAX - Published in JOSS (2022)

Mathematics Earth and Environmental Sciences
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

RxInfer — Peer-reviewed • Rank 13.6 • Science 77%

RxInfer: A Julia package for reactive real-time Bayesian inference - Published in JOSS (2023)

Updated 6 months ago

genparticlefilters.jl • Rank 6.0 • Science 75%

Building blocks for simple and advanced particle filtering in Gen.

Updated 5 months ago

dynesty • Rank 20.2 • Science 59%

Dynamic Nested Sampling package for computing Bayesian posteriors and evidences

Updated 5 months ago

pigeons.jl • Rank 11.4 • Science 64%

Sampling from intractable distributions, with support for distributed and parallel methods

Scientific Software
Updated 6 months ago

anesthetic — Peer-reviewed • Rank 16.2 • Science 59%

anesthetic: nested sampling visualisation - Published in JOSS (2019)

Mathematics
Scientific Software · Peer-reviewed
Updated 6 months ago

calibr • Rank 0.0 • Science 75%

Parallelized Bayesian calibration of simulations using Gaussian process emulation

Updated 6 months ago

prob-epi • Rank 7.1 • Science 67%

Course materials of "Bayesian Modelling and Probabilistic Programming with Numpyro, and Deep Generative Surrogates for Epidemiology"

Updated 6 months ago

viabel • Rank 9.0 • Science 64%

Efficient, lightweight variational inference and approximation bounds

Updated 5 months ago

harmonic • Rank 13.3 • Science 59%

Machine learning assisted marginal likelihood (Bayesian evidence) estimation for Bayesian model selection

Updated 5 months ago

brms • Rank 22.7 • Science 49%

brms R package for Bayesian generalized multivariate non-linear multilevel models using Stan

Updated 6 months ago

storage-ring-gravitational-wave-observatory • Rank 0.7 • Science 67%

Simulating the detection of millihertz (mHz) gravitational waves (GWs) from astrophysical sources by a Storage Ring Gravitational-wave Observatory (SRGO).

Updated 6 months ago

causalnex • Rank 11.4 • Science 54%

A Python library that helps data scientists to infer causation rather than observing correlation.

Updated 6 months ago

DiffEqBayes • Rank 11.2 • Science 54%

Extension functionality which uses Stan.jl, DynamicHMC.jl, and Turing.jl to estimate the parameters to differential equations and perform Bayesian probabilistic scientific machine learning

Scientific Software
Updated 6 months ago

fgivenx — Peer-reviewed • Rank 5.5 • Science 59%

fgivenx: A Python package for functional posterior plotting - Published in JOSS (2018)

Engineering (40%)
Scientific Software · Peer-reviewed
Updated 5 months ago

multilevelcoda • Rank 10.3 • Science 49%

multilevelcoda R package for Bayesian multilevel compositional data analysis

Updated 5 months ago

SUMMER • Rank 12.9 • Science 46%

SAE Unit/area Models and Methods for Estimation in R

Updated 5 months ago

https://github.com/pyro-ppl/numpyro • Rank 12.6 • Science 46%

Probabilistic programming with NumPy powered by JAX for autograd and JIT compilation to GPU/TPU/CPU.

Updated 5 months ago

hbamr • Rank 8.1 • Science 49%

Hierarchical Bayesian Aldrich-McKelvey Scaling in R via Stan

Updated 6 months ago

environmental-impact-assessment • Rank 1.8 • Science 54%

performs Bayesian inference modeling to scope environmental impact assessments in sociotechnical energy systems

Updated 5 months ago

https://github.com/bilby-dev/bilby • Rank 19.5 • Science 36%

A unified framework for stochastic sampling packages and gravitational-wave inference in Python.

Updated 6 months ago

bnlearn • Rank 17.7 • Science 36%

Python package for Causal Discovery by learning the graphical structure of Bayesian networks. Structure Learning, Parameter Learning, Inferences, Sampling methods.

Updated 5 months ago

bdrc • Rank 15.3 • Science 36%

Fits a discharge rating curve based on the power-law and the generalized power-law from data on paired water elevation and discharge measurements in a given river using a Bayesian hierarchical model as described in Hrafnkelsson et al. (2022)

Updated 5 months ago

https://github.com/biocore/birdman • Rank 4.8 • Science 46%

Bayesian Inferential Regression for Differential Microbiome Analysis

Updated 5 months ago

bayesianreasoning • Rank 8.7 • Science 36%

R package with functions to plot and help understand Positive and Negative Predictive Values, and their relationship with Sensitivity, Specificity and Prevalence.

Updated 5 months ago

https://github.com/juliagaussianprocesses/temporalgps.jl • Rank 8.3 • Science 36%

Fast inference for Gaussian processes in problems involving time. Partly built on results from https://proceedings.mlr.press/v161/tebbutt21a.html

Updated 5 months ago

pcfactorstan • Rank 8.2 • Science 36%

Stan Models for the Paired Comparison Factor Model

Updated 6 months ago

piranha • Rank 3.0 • Science 41%

Scripts for file processing and analysis in phylogenetics and phylogeography

Updated 4 months ago

https://github.com/google-deepmind/pgmax • Rank 6.4 • Science 36%

Loopy belief propagation for factor graphs on discrete variables in JAX

Updated 5 months ago

https://github.com/cbg-ethz/scicone • Rank 5.2 • Science 36%

Single-cell copy number calling and event history reconstruction.

Updated 5 months ago

https://github.com/acerbilab/normalizing-flow-regression • Rank 1.4 • Science 36%

Normalizing Flow Regression for Bayesian Inference with Offline Likelihood Evaluations

Updated 5 months ago

metaBMA • Rank 13.6 • Science 23%

Bayesian Model Averaging for Random and Fixed Effects Meta-Analysis

Updated 5 months ago

https://github.com/cdcgov/ww-inference-model • Rank 6.3 • Science 26%

An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case count data to produce nowcasts and forecasts of both observations

Updated 5 months ago

CMF • Rank 10.7 • Science 20%

R package for finding a joint low-rank representation for a collection of matrices with shared row or column entities.

Updated 5 months ago

bvartools • Rank 15.0 • Science 13%

Functions for Bayesian inference of vector autoregressive and vector error correction models

Updated 5 months ago

https://github.com/ciela-institute/tarp • Rank 4.9 • Science 23%

Coverage tests to check the quality of your posterior estimators.

Updated 5 months ago

https://github.com/daeh/emotionreasoning-cogsci22 • Rank 1.9 • Science 23%

Emotion Reasoning. Models, analyses and data for the 2022 CogSci paper, "Reasoning about the antecedents of emotions: Bayesian causal inference over an intuitive theory of mind"

Updated 5 months ago

statsr • Rank 14.0 • Science 10%

Companion package for the Coursera Statistics with R specialization

Updated 5 months ago

lgpr • Rank 9.9 • Science 13%

R-package for interpretable nonparametric modeling of longitudinal data using additive Gaussian processes. Contains functionality for inferring covariate effects and assessing covariate relevances. Various models can be specified using a convenient formula syntax.

Updated 5 months ago

ffp • Rank 9.2 • Science 13%

Fully Flexible Probabilities for Stress-Testing and Portfolio Construction

Updated 5 months ago

https://github.com/biaslab/ccta2024-bidconvection • Rank 0.0 • Science 13%

Experiments for CCTA 2024 submission on fast Bayesian gray-box identification of convection in heat transfer dynamics.

Updated 6 months ago

bsi • Science 54%

Generative Modeling with Bayesian Sample Inference

Updated 6 months ago

bayes-sampler-comparison • Science 49%

A comparison investigation of water sampling methods using Bayesian inference modeling as part of a 2023 study by the CSU Agricultural Water Quality Program