Netwulf
Netwulf: Interactive visualization of networks in Python - Published in JOSS (2019)
MNE-ICALabel
MNE-ICALabel: Automatically annotating ICA components with ICLabel in Python - Published in JOSS (2022)
PVGeo
PVGeo: an open-source Python package for geoscientific visualization in VTK and ParaView - Published in JOSS (2019)
The Python Sky Model 3 software
The Python Sky Model 3 software - Published in JOSS (2021)
Easy SimAuto (ESA)
Easy SimAuto (ESA): A Python Package that Simplifies Interacting with PowerWorld Simulator - Published in JOSS (2020)
GNOLL
GNOLL: Efficient Multi-Lingual Software for Real-World Dice Notation and Extensions - Published in JOSS (2023)
PyClustering
PyClustering: Data Mining Library - Published in JOSS (2019)
New developments in PySDM and PySDM-examples v2
New developments in PySDM and PySDM-examples v2: collisional breakup, immersion freezing, dry aerosol initialization, and adaptive time-stepping - Published in JOSS (2023)
pyuvdata v3
pyuvdata v3: an interface for astronomical interferometric data sets in Python - Published in JOSS (2025)
pyro
pyro: a framework for hydrodynamics explorations and prototyping - Published in JOSS (2019)
movement_primitives
movement_primitives: Imitation Learning of Cartesian Motion with Movement Primitives - Published in JOSS (2024)
Atramhasis
Atramhasis: An online SKOS vocabulary editor - Published in JOSS (2023)
SMACT
SMACT: Semiconducting Materials by Analogy and Chemical Theory - Published in JOSS (2019)
GemGIS - Spatial Data Processing for Geomodeling
GemGIS - Spatial Data Processing for Geomodeling - Published in JOSS (2022)
TESPy
TESPy: Thermal Engineering Systems in Python - Published in JOSS (2020)
pentapy
pentapy: A Python toolbox for pentadiagonal linear systems - Published in JOSS (2019)
DeepHyper
DeepHyper: A Python Package for Massively Parallel Hyperparameter Optimization in Machine Learning - Published in JOSS (2025)
GWSurrogate
GWSurrogate: A Python package for gravitational wave surrogate models - Published in JOSS (2025)
PyExperimenter
PyExperimenter: Easily distribute experiments and track results - Published in JOSS (2023)
FiLiP
FiLiP: A python software development kit (SDK) for accelerating the development of services based on FIWARE IoT platform - Published in JOSS (2024)
xagg
xagg: A Python package to aggregate gridded data onto polygons - Published in JOSS (2024)
qnm
qnm: A Python package for calculating Kerr quasinormal modes, separation constants, and spherical-spheroidal mixing coefficients - Published in JOSS (2019)
starfish
starfish: scalable pipelines for image-based transcriptomics - Published in JOSS (2021)
Netgraph
Netgraph: Publication-quality Network Visualisations in Python - Published in JOSS (2023)
spgrep
spgrep: On-the-fly generator of space-group irreducible representations - Published in JOSS (2023)
fractopo
fractopo: A Python package for fracture network analysis - Published in JOSS (2023)
PyCPD
PyCPD: Pure NumPy Implementation of the Coherent Point Drift Algorithm - Published in JOSS (2022)
Monte Carlo / Dynamic Code (MC/DC)
Monte Carlo / Dynamic Code (MC/DC): An accelerated Python package for fully transient neutron transport and rapid methods development - Published in JOSS (2024)
PyPulseq
PyPulseq: A Python Package for MRI Pulse Sequence Design - Published in JOSS (2019)
EPyT
EPyT: An EPANET-Python Toolkit for Smart Water Network Simulations - Published in JOSS (2023)
UltraNest - a robust, general purpose Bayesian inference engine
UltraNest - a robust, general purpose Bayesian inference engine - Published in JOSS (2021)
Pylinac
Pylinac: Image analysis for routine quality assurance in radiotherapy - Published in JOSS (2023)
Pyglmnet
Pyglmnet: Python implementation of elastic-net regularized generalized linear models - Published in JOSS (2020)
py-pde
py-pde: A Python package for solving partial differential equations - Published in JOSS (2020)
Efficient Polyhedral Gravity Modeling in Modern C++ and Python
Efficient Polyhedral Gravity Modeling in Modern C++ and Python - Published in JOSS (2024)
Larq
Larq: An Open-Source Library for Training Binarized Neural Networks - Published in JOSS (2020)
DSSE
DSSE: An environment for simulation of reinforcement learning-empowered drone swarm maritime search and rescue missions - Published in JOSS (2024)
Spectral Connectivity
Spectral Connectivity: a python package for computing multitaper spectral estimates and frequency-domain brain connectivity measures on the CPU and GPU - Published in JOSS (2022)
Gala
Gala: A Python package for galactic dynamics - Published in JOSS (2017)
Sciris
Sciris: Simplifying scientific software in Python - Published in JOSS (2023)
Mechkit
Mechkit: A continuum mechanics toolkit in Python - Published in JOSS (2022)
mTRFpy
mTRFpy: A Python package for temporal response function analysis - Published in JOSS (2023)
LiberTEM
LiberTEM: Software platform for scalable multidimensional data processing in transmission electron microscopy - Published in JOSS (2020)
PyRolL - An Extensible OpenSource Framework for Rolling Simulation
PyRolL - An Extensible OpenSource Framework for Rolling Simulation - Published in JOSS (2024)
ZOSPy
ZOSPy: optical ray tracing in Python through OpticStudio - Published in JOSS (2024)
<code>gollum</code>
<code>gollum</code>: An intuitive programmatic and visual interface for precomputed synthetic spectral model grids - Published in JOSS (2024)
tpcp
tpcp: Tiny Pipelines for Complex Problems - A set of framework independent helpers for algorithms development and evaluation - Published in JOSS (2023)
MatchPy
MatchPy: Pattern Matching in Python - Published in JOSS (2018)
Pymer4
Pymer4: Connecting R and Python for Linear Mixed Modeling - Published in JOSS (2018)
Spafe
Spafe: Simplified python audio features extraction - Published in JOSS (2023)
pointcloudset
pointcloudset: Efficient Analysis of Large Datasets of Point Clouds Recorded Over Time - Published in JOSS (2021)
Pywaterflood
Pywaterflood: Well connectivity analysis through capacitance-resistance modeling - Published in JOSS (2024)
regional-mom6
regional-mom6: A Python package for automatic generation of regional configurations for the Modular Ocean Model 6 - Published in JOSS (2024)
cfdm
cfdm: A Python reference implementation of the CF data model - Published in JOSS (2020)
SCIMAP
SCIMAP: A Python Toolkit for Integrated Spatial Analysis of Multiplexed Imaging Data - Published in JOSS (2024)
BioPsyKit
BioPsyKit: A Python package for the analysis of biopsychological data - Published in JOSS (2021)
GTFS Segments
GTFS Segments: A Fast and Efficient Library to Generate Bus Stop Spacings - Published in JOSS (2024)
abcvoting
abcvoting: A Python package for approval-based multi-winner voting rules - Published in JOSS (2023)
EPyT-Flow
EPyT-Flow: A Toolkit for Generating Water Distribution Network Data - Published in JOSS (2024)
Nanomesh
Nanomesh: A Python workflow tool for generating meshes from image data - Published in JOSS (2022)
LenslessPiCam
LenslessPiCam: A Hardware and Software Platform for Lensless Computational Imaging with a Raspberry Pi - Published in JOSS (2023)
Astronomical échelle spectroscopy data analysis with `muler`
Astronomical échelle spectroscopy data analysis with `muler` - Published in JOSS (2022)
MF2
MF2: A Collection of Multi-Fidelity Benchmark Functions in Python - Published in JOSS (2020)
Stripy
Stripy: A Python module for (constrained) triangulation in Cartesian coordinates and on a sphere. - Published in JOSS (2019)
LangFair
LangFair: A Python Package for Assessing Bias and Fairness in Large Language Model Use Cases - Published in JOSS (2025)
physical_validation
physical_validation: A Python package to assess the physical validity of molecular simulation results - Published in JOSS (2022)
Traja
Traja: A Python toolbox for animal trajectory analysis - Published in JOSS (2021)
salabim
salabim: discrete event simulation and animation in Python - Published in JOSS (2018)
pridepy
pridepy: A Python package to download and search data from PRIDE database - Published in JOSS (2025)
GALAHAD 4.0
GALAHAD 4.0: an open source library of Fortran packages with C and Matlab interfaces for continuous optimization - Published in JOSS (2023)
SpeechPy - A Library for Speech Processing and Recognition
SpeechPy - A Library for Speech Processing and Recognition - Published in JOSS (2018)
ZodiPy
ZodiPy: A Python package for zodiacal light simulations - Published in JOSS (2024)
quantile-forest
quantile-forest: A Python Package for Quantile Regression Forests - Published in JOSS (2024)
AnyPyTools
AnyPyTools: A Python package for reproducible research with the AnyBody Modeling System - Published in JOSS (2019)
SPEI
SPEI: A Python package for calculating and visualizing drought indices - Published in JOSS (2025)
argopy
argopy: A Python library for Argo ocean data analysis - Published in JOSS (2020)
planetMagFields
planetMagFields: A Python package for analyzing and plotting planetary magnetic field data - Published in JOSS (2024)
matbench-genmetrics
matbench-genmetrics: A Python library for benchmarking crystal structure generative models using time-based splits of Materials Project structures - Published in JOSS (2024)
SLEPLET
SLEPLET: Slepian Scale-Discretised Wavelets in Python - Published in JOSS (2023)
OMG
OMG: A Scalable and Flexible Simulation and Testing Environment Toolbox for Intelligent Microgrid Control - Published in JOSS (2020)
dython: A Set of Analysis and Visualization Tools for Data and Variables in Python
dython: A Set of Analysis and Visualization Tools for Data and Variables in Python - Published in JOSS (2025)
prysm
prysm: A Python optics module - Published in JOSS (2019)
opty
opty: Software for trajectory optimization and parameter identification using direct collocation - Published in JOSS (2018)
timeseriesflattener
timeseriesflattener: A Python package for summarizing features from (medical) time series - Published in JOSS (2023)
antimeridian
antimeridian: A Python package for correcting geometries that cross the 180th meridian - Published in JOSS (2025)
PyVBMC
PyVBMC: Efficient Bayesian inference in Python - Published in JOSS (2023)
pDEMtools
pDEMtools: conveniently search, download, and process ArcticDEM and REMA products - Published in JOSS (2024)
Emiproc
Emiproc: A Python package for emission inventory processing - Published in JOSS (2025)