ytree
ytree: A Python package for analyzing merger trees - Published in JOSS (2019)
hatchet
Graph-indexed Pandas DataFrames for analyzing hierarchical performance data
msprime
Simulate genealogical trees and genomic sequence data using population genetic models
agda-unimath
The agda-unimath library
splitp
Python package that implements split- and rank-based tools for inferring phylogenies, such as flattenings and subflattenings.
https://github.com/llnl/callflow
Visualization tool for analyzing call trees and graphs
giessdenkiez-de
The consequences of climate change, especially the dry and hot summers, are putting a strain on Berlin's ecosystem. Our urban trees are drying out and suffering long-term damage. Gieß den Kiez is made to enable coordinated citizen participation in the irrigation of urban trees.
sfa
The Sap Flow Analyzer (SFA) is an R Shiny App to process sap flow data recorded with Heat Field Deformation (HFD) instruments. The app allows to clean the data, determine k-values, calculate sap flow per section and density as well as to estimate sap flow rates and tree water use.
https://github.com/daniel-furman/data-structures
Data Structures and Algorithms in C++.