tidyHeatmap — Peer-reviewed • Rank 15.5 • Science 95%

tidyHeatmap: an R package for modular heatmap production based on tidy principles - Published in JOSS (2020)

cytoscape-fcose • Rank 27.5 • Science 75%

fCoSE: a fast Compound Spring Embedder

cytoscape.js-cise • Rank 5.3 • Science 85%

An implementation of the circular layout algorithm by Dogrusoz et al. as a Cytoscape.js extension

pathway-mapper • Rank 13.6 • Science 75%

PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways

deepgraph • Rank 15.0 • Science 59%

Analyze Data with Pandas-based Networks. Documentation:

diagrams • Rank 31.5 • Science 36%

:art: Diagram as Code for prototyping cloud system architectures

dot-language-server • Rank 11.5 • Science 54%

A language server for the DOT language.

pydot • Rank 29.3 • Science 36%

Python interface to Graphviz's Dot language

enola • Rank 7.9 • Science 44%

Enola 🕵🏾‍♀️ Holmes was an SRE.

rdf2rml • Rank 4.9 • Science 44%

RDF by Example: rdfpuml for True RDF Diagrams, rdf2rml for R2RML Generation

dot-language-support • Rank 4.6 • Science 44%

Library for parsing and analyzing DOT scripts

cytoscape-layout-utilities • Science 75%

Miscellaneous utilities for placement of nodes or components complementary to a main layout algorithm

https://github.com/ivis-at-bilkent/cytoscape.js-cosep • Science 8%

Compound Spring Embedder with Ports (CoSEP)

https://github.com/berquist/eg • Science 26%

syblars • Science 65%

SyBLaRS: Systems Biology Layout & Rendering Service

https://github.com/cokelaer/graphviz4all • Science 13%

dot and other graphviz executable in a simple singularity container

cytoscape-grid-guide • Science 65%

A Cytsocape.js extension to provide a framework for grid interactions such as grid lines and snapping to grid, and guidelines and snap support for alignment of nodes.

https://github.com/ivis-at-bilkent/cytoscape.js-c-tsm • Science 8%

Compound-Topology Shape Metrics Approach