PyMedPhys
PyMedPhys: A community effort to develop an open, Python-based standard library for medical physics applications - Published in JOSS (2022)
RT-utils
RT-utils: A Minimal Python Library for RT-struct Manipulation - Published in JOSS (2025)
@fang-bing-jiang/cornerstone-core
[Deprecated] Use Cornerstone3D Instead https://cornerstonejs.org/
@cleerly/cornerstone-tools
[Deprecated] Use Cornerstone3D Instead https://cornerstonejs.org/
@cleerly/cornerstone-wado-image-loader
[Deprecated] Use Cornerstone3D Instead https://cornerstonejs.org/
https://github.com/brianmanderson/dicom_rt_and_images_to_mask
Tools to help with the conversion of DICOM images, RT Structures, and dose to useful Python objects. Essentially DICOM to NumPy and SimpleITK Images
dicompyler-core
A library of core radiation therapy modules for DICOM RT used by dicompyler
https://github.com/cornerstonejs/dicomparser
JavaScript parser for DICOM Part 10 data
dicom.lens
An open source application for machine learning analysis of DICOM images to support cancer research.
monai-deploy
MONAI Deploy aims to become the de-facto standard for developing, packaging, testing, deploying and running medical AI applications in clinical production.
https://github.com/cornerstonejs/react-cornerstone-viewport
[Deprecated] Use Cornerstone3D Instead https://cornerstonejs.org/
https://github.com/cornerstonejs/calculate-suv
Tiny library for calculating Standardized Uptake Value for Nuclear Medicine (i.e. PET, SPECT)
https://github.com/cutright/dvh-analytics
A DICOM Database Application for Radiation Oncology
GNU Data Language 1.0
GNU Data Language 1.0: a free/libre and open-source drop-in replacement for IDL/PV-WAVE - Published in JOSS (2022)
osparc-iseg
The Medical Image Segmentation Tool Set (iSEG) is a fully integrated segmentation (including pre- and postprocessing) toolbox for the efficient, fast, and flexible generation of anatomical models from various types of imaging data
https://github.com/codingfisch/niftiview-app
Standalone app for viewing volumetric images 🧠 based on Python
openjphpy
A Python wrapper for OpenJPH for encoding/decoding High-Throughput JPEG 2000 (HTJ2K)
https://github.com/bhklab/nbia-toolkit
Python package for programmatic access to the National Biomedical Imaging Archive (NBIA) and The Cancer Imaging Archive (TCIA)