PyVista
PyVista: 3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK) - Published in JOSS (2019)
PoreSpy
PoreSpy: A Python Toolkit for Quantitative Analysis of Porous Media Images - Published in JOSS (2019)
FURY
FURY: advanced scientific visualization - Published in JOSS (2021)
fluidx3d
The fastest and most memory efficient lattice Boltzmann CFD software, running on all GPUs and CPUs via OpenCL. Free for non-commercial use.
cmcrameri
Making Fabio Crameri's perceptually uniform colourmaps for geosciences available on PyPI and conda-forge
itkwidgets
An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.
pyqtgraph
Fast data visualization and GUI tools for scientific / engineering applications
calcam
Python package of spatial calibration tools for science & engineering camera systems.
ipyvolume
3d plotting for Python in the Jupyter notebook based on IPython widgets using WebGL
hydrofunctions
A suite of convenience functions for working with hydrology data in an interactive Python session.
https://github.com/ccampjr/sciplot-pyqt
A Matplotlib-wrapped user-interface for creating and editing publication-ready images and plots
https://github.com/arcticsnow/snowpyt
Python package to load, manipulate and plot snowpit data.
cosmoscout-vr
:milky_way: A virtual universe which lets you explore, analyze and present huge planetary datasets and large simulation data in real-time.
Pore2Chip
Pore2Chip: All-in-one python tool for soil microstructure analysis and micromodel design - Published in JOSS (2025)
https://github.com/comp-physics/scientific-visualization
Scientific visualization tutorials using Paraview.
global-chem
A Knowledge Graph of Common Chemical Names to their Molecular Definition
https://github.com/dbetchkal/public_dataglean_i
A Processing based tool to glean useful numeric results that are 'locked up' in a digital image
https://github.com/openchemistry/tomviz
Cross platform, open source application for the processing, visualization, and analysis of 3D tomography data
amep
The Active Matter Evaluation Package (AMEP) - a Python library for the analysis of particle-based and continuum simulation data of soft and active matter systems
datoviz
⚡ Datoviz: high-performance GPU rendering for scientific data visualization
GNU Data Language 1.0
GNU Data Language 1.0: a free/libre and open-source drop-in replacement for IDL/PV-WAVE - Published in JOSS (2022)
pygmtsar
PyGMTSAR (Python InSAR): Powerful and Accessible Satellite Interferometry