node • Rank 14.9 • Science 26%

neotoma • Rank 17.9 • Science 23%

Programmatic R interface to the Neotoma Paleoecological Database.

landscapetools • Rank 17.9 • Science 23%

📦 R package for some of the less-glamorous tasks involved in landscape analysis 🌏

ggalt • Rank 17.9 • Science 23%

:earth_americas: Extra Coordinate Systems, Geoms, Statistical Transformations & Scales for 'ggplot2'

https://github.com/alleninstitute/scrattch.mapping • Rank 4.9 • Science 36%

Genearlized mapping scripts for RNA-seq and Patch-seq data

patrick • Rank 14.9 • Science 26%

Parameterized testing in R is kind of cool!

citation-extractor • Rank 7.9 • Science 33%

A tool to extract canonical references from text.

https://github.com/crowdstrike/aws-ssm-distributor • Rank 4.9 • Science 36%

classyfirer • Rank 7.9 • Science 33%

R Interface to the ClassyFire REST API

parsec • Rank 17.9 • Science 23%

A universal Python parser combinator library inspired by Parsec library of Haskell.

BellScenario • Rank 2.9 • Science 38%

Compute Bell inequalities and their quantum violations.

amc • Rank 7.9 • Science 33%

An automatic angular-momentum reduction package for tensor networks

dali-dataset • Rank 12.9 • Science 28%

DALI: a large Dataset of synchronised Audio, LyrIcs and vocal notes.

https://github.com/con/fscacher • Rank 14.9 • Science 26%

Caching results of operations on heavy file trees

https://github.com/crowdstrike/rusty-falcon • Rank 14.9 • Science 26%

Rust bindings for CrowdStrike Falcon API

https://github.com/astorfi/3d-convolutional-speaker-recognition-pytorch • Rank 4.9 • Science 36%

:speaker: Deep Learning & 3D Convolutional Neural Networks for Speaker Verification

https://github.com/52north/sensorweb-server-helgoland-adapters • Rank 14.9 • Science 26%

A adapter implementations to provide data from different sources via Sensor Web Server Helgoland

https://github.com/bencardoen/smlmvis • Rank 4.9 • Science 36%

Superresolution visualization of 3D protein localization data from a range of microscopes

https://github.com/aiidateam/aiida-website • Rank 4.9 • Science 36%

The primary website for AiiDA

https://github.com/apertium/apertium-separable • Rank 4.9 • Science 36%

Module for reordering separable/discontiguous multiwords.

https://github.com/aryashah2k/ai-career-guidance-system • Rank 4.9 • Science 36%

Final Year Project At MPSTME, Mumbai

private-jets • Rank 4.9 • Science 36%

Track and quantify emissions of private jets

python-bioformats • Rank 17.9 • Science 23%

Read and write life sciences file formats

ezECM • Rank 4.9 • Science 36%

R package including functions for Bayesian Event Categorization Matrix models

cloud-bids-layout • Rank 4.9 • Science 36%

Use pybids with datasets in the cloud

mvp • Rank 14.8 • Science 26%

https://github.com/calebbell/pandas • Rank 7.8 • Science 33%

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

medaka • Rank 17.8 • Science 23%

Sequence correction provided by ONT Research

https://github.com/crsh/depgraph • Rank 4.8 • Science 36%

Provides an R function to plot the complete dependency graph of an R package and helps to cut down on dependencies.

https://github.com/anenadic/2016-12-05-oxford-old • Rank 4.8 • Science 36%

CNEr • Rank 17.8 • Science 23%

Conserved Noncoding Elements (CNEs) Identification and Visualisation

pstack • Rank 14.8 • Science 26%

Tool to dump python thread and greenlet stacks.

air • Rank 14.8 • Science 26%

The new web framework that breathes fresh air into Python web development. Built with FastAPI, Starlette, Pydantic, and HTMX.

SoupX • Rank 17.8 • Science 23%

R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data

https://github.com/carperai/cheese • Rank 7.8 • Science 33%

Used for adaptive human in the loop evaluation of language and embedding models.

JLSO • Rank 12.8 • Science 28%

Julia Serialized Object (JLSO) file format for storing checkpoint data.

bgcval2 • Rank 4.8 • Science 36%

Package for BGCVal v2.0

https://github.com/bytedance/avatarverse • Rank 4.8 • Science 36%

code repo for the paper "AvatarVerse: High-quality & Stable 3D Avatar Creation from Text and Pose" (AAAI2024)

https://github.com/ccs-lab/easyml • Rank 7.8 • Science 33%

A toolkit for easily building and evaluating machine learning models.

mombf • Rank 14.8 • Science 26%

mombf package

finalfit • Rank 14.8 • Science 26%

Quickly create elegant regression results tables and plots when modelling in R

aioelectricitymaps • Rank 14.8 • Science 26%

Async Python 3 wrapper for Electricity Maps

https://github.com/btschwertfeger/growth-model-website • Rank 1.8 • Science 39%

Website with adjustable visualizations to demonstrate an atlantic cod growth model

https://github.com/agrdatasci/tricot-genomic • Rank 1.8 • Science 39%

Data-driven decentralized breeding increases genetic gain in a challenging crop production environment

https://github.com/conorwilliams/ballot • Rank 1.8 • Science 39%

Code for the Churchill MCR postgraduate-rooms ballot

dissertation • Rank 1.8 • Science 39%

My Ph.D. dissertation in linguistics at the University of California, Santa Barbara

https://github.com/btschwertfeger/energy-balance-models-website • Rank 1.8 • Science 39%

Website for visualization of two different energy balance models with customizable parameters. (+ Jupyter Notebook)

adult • Rank 1.8 • Science 39%

Consumption of Pornography Online Using Passively Observed Browsing Data

https://github.com/wesleybeckner/gains • Rank 4.8 • Science 36%

project that enables molecular design and computational screening of small molecules

bioscan-5m • Rank 4.8 • Science 36%

BIOSCAN-5M: A Multimodal Dataset for Insect Biodiversity

https://github.com/cdcgov/cfa-viral-lineage-model • Rank 4.8 • Science 36%

https://github.com/jerbob/tapmap • Rank 4.8 • Science 36%

Command line keyboard heatmap generator.

semantic-pydantic • Rank 4.8 • Science 36%

Annotate data models in Pydantic and APIs in FastAPI with the Bioregistry to make them more FAIR

pdf2image • Rank 27.8 • Science 13%

A python module that wraps the pdftoppm utility to convert PDF to PIL Image object

deepsr • Rank 7.8 • Science 33%

rstudioapi • Rank 27.8 • Science 13%

Safely access RStudio's API (when available)

https://github.com/business-science/tibbletime • Rank 17.8 • Science 23%

Time-aware tibbles

autogpt • Rank 14.8 • Science 26%

🦀 A Pure Rust Framework For Building AGI (WIP).

https://github.com/datamade/clearstreets-processing • Rank 4.8 • Science 36%

Converts GPX files to OSM (Open Street Map) and snaps lines to city street grid

https://github.com/google-research/precondition • Rank 14.8 • Science 26%

gitlabr • Rank 17.8 • Science 23%

An R client for the GitLab API

detect-waste • Rank 7.8 • Science 33%

AI to Combat Environmental Pollution - detecting plastic waste in the environment to combat environmental pollution and promote circular economy (Deep Learning, PyTorch)

https://github.com/ai-forever/dynamic_gestures • Rank 4.8 • Science 36%

hsma6_des_book • Rank 4.8 • Science 36%

A book summarising the content of the DES module in the HSMA programme and covering additional concepts that wouldn't fit in the course

mosqito • Rank 14.8 • Science 26%

MoSQITo is a unified and modular development framework of key sound quality metrics favoring reproducible science and efficient shared scripting among engineers, teachers and researchers community.

assembly_stats • Rank 7.7 • Science 33%

Calculates both scaffold and contig statistics (N50, L50, etc.) from a scaffold FASTA file.

https://github.com/clima/climagen.jl • Rank 4.7 • Science 36%

This project contains the CliMA superresolution work using Julia's Flux.jl and SciML.jl frameworks.

https://github.com/spsanderson/tidydensity • Rank 4.7 • Science 36%

Create tidy probability/density tibbles and plots of randomly generated and empirical data.

showyourwork2 • Rank 4.7 • Science 36%

A draft of version 2 of showyourwork

seedlot-selection-tool • Rank 4.7 • Science 36%

A web-based spatial analysis and mapping tool that allows managers to find appropriate seedlots for a given planting site, given information about species, transfer limits, and historic and future climate projections across the landscape.

ecalc • Rank 14.7 • Science 26%

eCalc™ is a software tool for calculation of energy demand and greenhouse gas emissions from oil and gas production and processing.

textrecipes • Rank 14.7 • Science 26%

Extra recipes for Text Processing

kin • Rank 14.7 • Science 26%

Sane PBXProj files

https://github.com/algebraicjulia/algebraicabms.jl • Rank 4.7 • Science 36%

Stochastic graph rewriting for agent based modeling

raggedexperiment • Rank 4.7 • Science 36%

Matrix-like representations of mutation and CN data

circlize • Rank 20.7 • Science 20%

Circular visualization in R

ramlegacy • Rank 7.7 • Science 33%

R :package: to download, cache and read in different versions of the RAM Legacy Stock Assessment Data Base, an online compilation of stock assessment results for commercially exploited marine populations from around the world.

https://github.com/cran-task-views/environmetrics • Rank 4.7 • Science 36%

CRAN Task View: Analysis of Ecological and Environmental Data

HIBAG • Rank 14.7 • Science 26%

R package – HLA Genotype Imputation with Attribute Bagging (development version only)

fdtool • Rank 7.7 • Science 33%

anthronet • Rank 4.7 • Science 36%

Unity's Privacy-Preserving Novel Human Body Model Trained Solely on Synthetic Data and Corresponding Dense Anthropometric Measurements

https://github.com/d-krupke/cp-sat-log-analyzer • Rank 4.7 • Science 36%

A webapp that visualizes and annotates your ortools' CP-SAT logs. Partially inspired by gurobi-logtools.

https://github.com/amazon-science/hr-multiwoz-tod-llm-agent • Rank 4.7 • Science 36%

https://github.com/broadinstitute/dig-aggregator-methods • Rank 4.7 • Science 36%

Monorepo of methods implemented for the Aggregator

imabc • Rank 4.7 • Science 36%

https://github.com/alleninstitute/zeromq-xop • Rank 4.7 • Science 36%

The ZeroMQ XOP enables Igor Pro to interface over the network using a ZeroMQ messaging layer and JSON as message format

https://github.com/bluebrain/luigi-tools • Rank 4.7 • Science 36%

Extra tools to work with the Luigi library

pygef • Rank 14.7 • Science 26%

Parse soil measurement data

gbm • Rank 17.7 • Science 23%

Gradient boosted models (the old gbm package)

State-Averaged Orbital-Optimized VQE — Peer-reviewed • Rank 7.7 • Science 33%

State-Averaged Orbital-Optimized VQE: A quantum algorithm for the democratic description of ground and excited electronic states - Published in JOSS (2024)

roms • Rank 4.7 • Science 36%

Regional Ocean Modeling System (ROMS)

https://github.com/bytedance/e2str • Rank 4.7 • Science 36%

The official code for the CVPR 2024 paper: Multi-modal In-Context Learning Makes an Ego-evolving Scene Text Recognizer

phiercc • Rank 7.7 • Science 33%

Hierarchical clustering of cgMLST

semPlot • Rank 17.7 • Science 23%

Path diagrams and visual analysis of various SEM packages' output

META-2021 • Rank 4.7 • Science 36%

The Model for Economic Tipping (point) Analysis

https://github.com/alleninstitute/spatial_compare • Rank 4.7 • Science 36%

package for comparing spatial transcriptomics datasets

https://github.com/amazon-science/contraclm • Rank 4.7 • Science 36%

[ACL 2023] Code for ContraCLM: Contrastive Learning For Causal Language Model

globaldeltachange • Rank 4.7 • Science 36%

Global Delta Dataset

https://github.com/cvxgrp/simulator • Rank 14.6 • Science 26%

Tool to support backtests

bpmodels • Rank 4.6 • Science 36%

[RETIRED. Use the epichains package instead]. Methods for simulating and analysing the sizes and lengths of chains from branching process models