https://github.com/bioconductor/biostrings
Efficient manipulation of biological strings
https://github.com/bioconductor/genomicranges
Representation and manipulation of genomic intervals
https://github.com/bioconductor/iranges
Foundation of integer range manipulation in Bioconductor
https://github.com/bioconductor/delayedarray
A unified framework for working transparently with on-disk and in-memory array-like datasets
https://github.com/bioconductor/biobase
Biobase: Base functions for Bioconductor
https://github.com/bioconductor/organism.dplyr
https://github.com/bioconductor/genomicfiles
Distributed computing by file or by range
https://github.com/bioconductor/gpls
Classification using generalized partial least squares
https://github.com/bioconductor/biocbaseutils
https://github.com/bioconductor/biocio
Standard input / output framework for use by Bioconductor packages
https://github.com/bioconductor/gostats
Tools for manipulating GO and microarrays.
https://github.com/bioconductor/summarizedexperiment
A container (S4 class) for matrix-like assays
https://github.com/bioconductor/matrixgenerics
S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects
https://github.com/bioconductor/biocviews
Categorized views of R package repositories
https://github.com/bioconductor/genefilter
genefilter: methods for filtering genes from high-throughput experiments
https://github.com/bioconductor/graph
graph: A package to handle graph data structures
https://github.com/bioconductor/bsgenomeforge
Forge your own BSgenome data package
https://github.com/bioconductor/hypergraph
A package providing hypergraph data structures
https://github.com/bioconductor/cocitestats
Different test statistics based on co-citation.
https://github.com/bioconductor/ensemblvep
[DEPRECATED] R Interface to Ensembl Variant Effect Predictor
https://github.com/bioconductor/geneplotter
Graphics related functions for Bioconductor
https://github.com/bioconductor/organismdbi
Software to enable the smooth interfacing of different database packages
https://github.com/bioconductor/chipseq
chipseq: A package for analyzing chipseq data
https://github.com/bioconductor/xvector
Foundation of external vector representation and manipulation in Bioconductor
https://github.com/bioconductor/sparsearray
High-performance sparse data representation and manipulation in R
https://github.com/bioconductor/ensembl.utils
Low-level utilities to retrieve data from Ensembl
https://github.com/bioconductor/biocgenerics
Defines many S4 generic functions used in Bioconductor
https://github.com/bioconductor/experimenthubdata
Add resources to ExperimentHub
https://github.com/bioconductor/bsgenome
Software infrastructure for efficient representation of full genomes and their SNPs
https://github.com/bioconductor/rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
https://github.com/bioconductor/ucsc.utils
Low-level utilities to retrieve data from the UCSC Genome Browser
https://github.com/bioconductor/s4arrays
Foundation of array-like containers in Bioconductor
https://github.com/bioconductor/hdf5array
HDF5 datasets as array-like objects in R
https://github.com/bioconductor/s4vectors
Foundation of vector-like and list-like containers in Bioconductor
https://github.com/bioconductor/annotationdbi
Manipulation of SQLite-based annotations in Bioconductor
https://github.com/bioconductor/updateobject
Find/fix old serialized S4 instances
https://github.com/bioconductor/gseabase
Gene set enrichment data structures and methods
https://github.com/bioconductor/rhtslib
HTSlib high-throughput sequencing library as an R package
https://github.com/bioconductor/genomicfeatures
Query the gene models of a given organism/assembly
https://github.com/bioconductor/genomeinfodb
Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
https://github.com/bioconductor/txdbmaker
A set of tools for making TxDb objects from genomic annotations from various sources (e.g. UCSC, Ensembl, and GFF files)
https://github.com/bioconductor/genomicalignments
Representation and manipulation of short genomic alignments
https://github.com/bioconductor/annotationhubdata
Transform public data resources into Bioconductor Data Structures
https://github.com/bioconductor/annotationforge
Tools for building SQLite-based annotation data packages
https://github.com/bioconductor/genemeta
MetaAnalysis for High Throughput Experiments
https://github.com/bioconductor/variantannotation
Annotation of Genetic Variants