https://github.com/bytedance/elkeid
Elkeid is an open source solution that can meet the security requirements of various workloads such as hosts, containers and K8s, and serverless. It is derived from ByteDance's internal best practices.
odin
Data-structure definition/validation/traversal, mapping and serialisation toolkit for Python
https://github.com/biolink/ontobio
python library for working with ontologies and ontology associations
https://github.com/clariah/dane-server
Back-end for the Distributed Annotation 'n' Enrichment (DANE) system
https://github.com/chakravala/fieldalgebra.jl
Field-algebra based on Group / Ring symbolic vector module extension
https://github.com/alleninstitute/bonsai_workflows
A collection of bonsai workflows developed at the Allen Institute
https://github.com/amazon-science/dlwp-benchmark
Code for the paper: Comparing and Contrasting Deep Learning Weather Prediction Backbones on Navier-Stokes and Atmospheric Dynamics
https://github.com/anowacki/stationxml.jl
Parse seismic station information in the FDSN StationXML format, in Julia
https://github.com/cosima/ocean-ic
Create MOM or NEMO initial conditions from GODAS or ORAS4. Uses ESMF for regridding.
https://github.com/broadinstitute/dsp-reusable-workflows
publicly available reusable workflows
kami-lib
HTR / OCR models evaluation agnostic Python package, originally based on the Kraken transcription system.
https://github.com/bioconductor/gpls
Classification using generalized partial least squares
https://github.com/fanchengyan/data-downloader
Make downloading scientific data much easier
https://github.com/alleninstitute/octodac
8 channel analog output shield for Arduino Uno
https://github.com/broadinstitute/dcc_pigean_flask
Flask server for the Pigean method
https://github.com/voxpupuli/puppet-poudriere
A Puppet module for managing Poudriere, the PkgNG build system.
https://github.com/brianpugh/autoregistry
Automatic registry design-pattern library for mapping string names to code functionality.
building-data-genome-project-2
Whole building non-residential hourly energy meter data from the Great Energy Predictor III competition
tufterhandout
Output formats for Tufte-style handouts in pdf and html for Rmarkdown
https://github.com/broadinstitute/python-cert_manager
Python interface to the Sectigo Certificate Manager REST API
https://github.com/comunica/generate-comunica
🎛 Generators for comunica packages
marl-idr-multi-agent-reinforcement-learning-for-incentive-based-residential-demand-response
Code for the paper "MARL-iDR: Multi-Agent Reinforcement Learning for Incentive-based Residential Demand Response"
nlmod
Python package to build, run and visualize MODFLOW 6 groundwater models in the Netherlands.
variancePartition
Quantify and interpret divers of variation in multilevel gene expression experiments
https://github.com/compvis/disclip
[AAAI 2025] Does VLM Classification Benefit from LLM Description Semantics?
https://github.com/bowang-lab/maester
Masked Autoencoder Guided Segmentation at Pixel Resolution
https://github.com/acdh-oeaw/lioe-public-frontend
This repository contains the code of the WBÖ lexicographic information system's frontend.
https://github.com/intelpython/mkl_umath
Package implementing NumPy's UFuncs based on SVML and MKL VML
https://github.com/astrazeneca/peptide-tools
Collection of tools to calculate properties of natural or synthetic peptides and proteins.
https://github.com/agormp/seqconverter
Command-line program for reading, writing, analyzing, and manipulating sequence files
https://github.com/cqcl/pytket-braket
pytket-braket, extensions for pytket quantum SDK
https://github.com/cboettig/duckdbfs
Simple wrappers for duckdb to open local and remote filesystems
https://github.com/bootphon/shennong
A Python toolbox for speech features extraction
rnaturalearthdata
to hold low and medium resolution data used by rnaturalearth
OceanAdapt
Scripts and data for OceanAdapt website to visualize shifts in marine animal distributions
https://github.com/blockresearchgroup/compas-fofin
Rhino plugin for form finding of tension-only, compression-only, and mixed tension-compression structures with axial forces, using constrained force-density and dynamic relaxation solvers.
https://github.com/bminixhofer/tokenkit
A toolkit implementing advanced methods to transfer models and model knowledge across tokenizers.
https://github.com/chrisgrieser/hyper-seek
Alfred workflow that shows inline search results, without a keyword.
herer
R package that provides an interface to the HERE REST APIs: Geocoder API, Routing API, Traffic API, Public Transit API and Destination Weather API. Locations and routes are returned as 'sf' objects.
https://github.com/simleek/displayarray
A OpenCV interface to display tensors, multiple cameras, and so on.
tqsim
TQSim is an open-source anyon-based Topological Quantum Computing simulator
https://github.com/bowang-lab/congfu
CongFu: Conditional Graph Fusion for Drug Synergy Prediction
school-choice
This Python implementation tries to model school choice and resulting school segregation based on the work of Schelling (1971) and Stoica & Flache (2014).
https://github.com/cboettig/contentid
:package: R package for working with Content Identifiers
https://github.com/beacon-biosignals/onda.jl
A Julia package for high-throughput manipulation of structured signal data across arbitrary domain-specific encodings, file formats and storage layers
CopyNumberPlots
R package to create plots representing copy number data using karyoploteR
Chapter-9
Repository with the code and data for all figures from Chapter 9 of the IPCC AR6
https://github.com/chrisgrieser/pseudometa-obsidian-plugin-template
A description for the plugin
https://github.com/alan-turing-institute/nexus-allowlist
Enforce allowlists for Nexus3
evalwwforecasts
Evaluation of forecasts with and without incorporating wastewater
https://github.com/apertium/apertium-zho
Apertium linguistic data for Mandarin Chinese
is-vegan
Is-Vegan helps you to find out which food ingredients are vegan / non-vegan
https://github.com/amazon-science/codesage
CodeSage: Code Representation Learning At Scale (ICLR 2024)
https://github.com/austinksmith/Hamsters.js
100% Vanilla Javascript Multithreading & Parallel Execution Library
https://github.com/johnkerl/miller
Miller is like awk, sed, cut, join, and sort for name-indexed data such as CSV, TSV, and tabular JSON
https://github.com/barrust/mediawiki
MediaWiki API wrapper in python http://pymediawiki.readthedocs.io/en/latest/
wildlife-datasets
WildlifeDatasets: An open-source toolkit for animal re-identification