Updated 9 months ago

scipy • Rank 38.4 • Science 64%

SciPy library main repository

Updated 9 months ago

synphot • Rank 17.3 • Science 85%

Synthetic photometry using Astropy

Updated 9 months ago

napari • Rank 25.0 • Science 77%

napari: a fast, interactive, multi-dimensional image viewer for python

Updated 9 months ago

meshio • Rank 24.9 • Science 77%

:spider_web: input/output for many mesh formats

Scientific Software
Updated 9 months ago

Chi — Peer-reviewed • Rank 3.8 • Science 98%

Chi: A Python package for treatment response modelling - Published in JOSS (2024)

Updated 9 months ago

multiqc • Rank 24.6 • Science 77%

Aggregate results from bioinformatics analyses across many samples into a single report.

Updated 9 months ago

geocat-comp • Rank 15.9 • Science 85%

GeoCAT-comp provides implementations of computational functions for operating on geosciences data. Many of these functions originated in NCL and were translated into Python.

Scientific Software
Updated 9 months ago

Leafmap — Peer-reviewed • Rank 22.9 • Science 77%

Leafmap: A Python package for interactive mapping and geospatial analysis with minimal coding in a Jupyter environment - Published in JOSS (2021)

Political Science Earth and Environmental Sciences Engineering
Scientific Software · Peer-reviewed
Updated 9 months ago

pybamm • Rank 22.6 • Science 77%

Fast and flexible physics-based battery models in Python

Updated 9 months ago

veros • Rank 14.5 • Science 85%

The versatile ocean simulator, in pure Python, powered by JAX.

Updated 9 months ago

pymeasure • Rank 22.3 • Science 77%

Scientific measurement library for instruments, experiments, and live-plotting

Updated 9 months ago

easyvvuq • Rank 14.0 • Science 85%

Python 3 framework to facilitate verification, validation and uncertainty quantification (VVUQ) for a wide variety of simulations.

Updated 9 months ago

dtaidistance • Rank 21.7 • Science 77%

Time series distances: Dynamic Time Warping (fast DTW implementation in C)

Updated 9 months ago

geocat-viz • Rank 13.5 • Science 85%

GeoCAT-viz contains tools to help plot geoscience data, including convenience and plotting functions that are used to facilitate plotting geosciences data with Matplotlib, Cartopy, and other visualization packages.

Updated 9 months ago

napari-clusters-plotter • Rank 13.5 • Science 85%

A napari plugin for clustering objects according to their properties.

Scientific Software
Updated 9 months ago

pytransform3d — Peer-reviewed • Rank 21.3 • Science 77%

pytransform3d: 3D Transformations for Python - Published in JOSS (2019)

Mathematics
Scientific Software · Peer-reviewed
Updated 9 months ago

iminuit • Rank 21.1 • Science 77%

Jupyter-friendly Python interface for C++ MINUIT2

Updated 9 months ago

cpg • Rank 12.8 • Science 85%

A library to extract Code Property Graphs from C/C++, Java, Go, Python, Ruby and every other language through LLVM-IR.

Earth and Environmental Sciences (40%)
Updated 9 months ago

pymsis • Rank 12.4 • Science 85%

Python interface to the NRLMSIS codes for calculating atmospheric densities and constituents at satellite altitudes

Updated 9 months ago

connected-components-3d • Rank 20.2 • Science 77%

Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

Updated 9 months ago

pyfai • Rank 20.1 • Science 77%

Fast Azimuthal Integration in Python

Updated 9 months ago

lightkurve • Rank 20.0 • Science 77%

A friendly package for Kepler & TESS time series analysis in Python.

Updated 9 months ago

pygmt • Rank 20.0 • Science 77%

A Python interface for the Generic Mapping Tools.

Updated 9 months ago

bmi-topography • Rank 11.7 • Science 85%

Fetch and cache land elevation data from OpenTopography through an API, BMI, or CLI

Updated 9 months ago

spacepy • Rank 19.7 • Science 77%

Space Science library for Python - contains superposed epoch classes, drift shell tracing, access to magnetic field models, streamline tracing, bootstrap confidence limits, time and coordinate conversions, etc.

Updated 9 months ago

gammapy • Rank 19.5 • Science 77%

A Python package for gamma-ray astronomy

Updated 9 months ago

herbie-data • Rank 19.4 • Science 77%

Download numerical weather prediction datasets (HRRR, RAP, GFS, IFS, etc.) from NOMADS, NODD partners (Amazon, Google, Microsoft), ECMWF open data, and the University of Utah Pando Archive System.

Updated 9 months ago

wradlib • Rank 19.3 • Science 77%

weather radar data processing - python package

Updated 9 months ago

qcelemental • Rank 19.3 • Science 77%

Periodic table, physical constants, and molecule parsing for quantum chemistry.

Updated 9 months ago

igneous-pipeline • Rank 19.3 • Science 77%

Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

Updated 9 months ago

openpnm • Rank 19.1 • Science 77%

A Python package for performing pore network modeling of porous media

Updated 9 months ago

ikpy • Rank 18.6 • Science 77%

IKPy, an Universal Inverse Kinematics library

Updated 9 months ago

ccdproc • Rank 18.5 • Science 77%

Astropy affiliated package for reducing optical/IR CCD data

Updated 9 months ago

filter-functions • Rank 10.4 • Science 85%

Efficient numerical calculation of generalized filter functions

Scientific Software
Updated 9 months ago

BrainGlobe Atlas API — Peer-reviewed • Rank 18.2 • Science 77%

BrainGlobe Atlas API: a common interface for neuroanatomical atlases - Published in JOSS (2020)

Scientific Software · Peer-reviewed
Updated 9 months ago

cchdo.hydro • Rank 9.9 • Science 85%

The big ol CCHDO netCDF-CF project

Updated 9 months ago

qbraid • Rank 17.9 • Science 77%

A platform-agnostic quantum runtime framework

Scientific Software
Updated 9 months ago

PySWMM — Peer-reviewed • Rank 17.4 • Science 77%

PySWMM: The Python Interface to Stormwater Management Model (SWMM) - Published in JOSS (2020)

Updated 9 months ago

gladia-torchaudio • Rank 30.4 • Science 64%

Data manipulation and transformation for audio signal processing, powered by PyTorch

Updated 9 months ago

catalystcoop.pudl • Rank 17.3 • Science 77%

The Public Utility Data Liberation Project provides analysis-ready energy system data to climate advocates, researchers, policymakers, and journalists.

Updated 9 months ago

pastas • Rank 17.3 • Science 77%

Pastas is an open-source Python framework for the analysis of groundwater time series.

Updated 9 months ago

lenskit • Rank 17.1 • Science 77%

Python recommendation toolkit

Updated 9 months ago

pyiron_atomistics • Rank 17.1 • Science 77%

pyiron_atomistics - an integrated development environment (IDE) for atomistic simulation in computational materials science.

Scientific Software
Updated 9 months ago

DEVSIM — Peer-reviewed • Rank 16.9 • Science 77%

DEVSIM: A TCAD Semiconductor Device Simulator - Published in JOSS (2022)

Updated 9 months ago

manim-slides • Rank 16.8 • Science 77%

Tool for live presentations using manim

Updated 9 months ago

pymrio • Rank 16.8 • Science 77%

Multi-Regional Input-Output Analysis in Python.

Updated 9 months ago

sncosmo • Rank 16.5 • Science 77%

Python library for supernova cosmology

Updated 9 months ago

scikit-activeml • Rank 16.3 • Science 77%

scikit-activeml: Python library for active learning on top of scikit-learn

Updated 9 months ago

pyiron • Rank 16.0 • Science 77%

pyiron - an integrated development environment (IDE) for computational materials science.

Updated 9 months ago

pyprocar • Rank 16.0 • Science 77%

A Python library for electronic structure pre/post-processing

Updated 9 months ago

pytest • Rank 38.9 • Science 54%

The pytest framework makes it easy to write small tests, yet scales to support complex functional testing

Updated 9 months ago

decimer • Rank 15.9 • Science 77%

DECIMER Image Transformer is a deep-learning-based tool designed for automated recognition of chemical structure images. Leveraging transformer architectures, the model converts chemical images into SMILES strings, enabling the digitization of chemical data from scanned documents, literature, and patents.

Updated 9 months ago

geocat-examples • Rank 7.9 • Science 85%

GeoCAT-examples provides a gallery of visualization examples demonstrating how to reproduce plots from NCL Applications scripts with packages in Python. It also includes some longer form examples demonstrating how to use functionality from various GeoCAT packages.

Updated 9 months ago

pypartmc • Rank 15.8 • Science 77%

Python (and C++) interface to PartMC with Jupyter/Python, Julia and Matlab examples

Updated 9 months ago

plotnine • Rank 28.7 • Science 64%

A Grammar of Graphics for Python

Updated 9 months ago

jwst • Rank 20.6 • Science 72%

Python library for science observations from the James Webb Space Telescope

Updated 9 months ago

kda • Rank 7.4 • Science 85%

Python package used for the analysis of biochemical kinetic diagrams.

Updated 9 months ago

hatchet • Rank 7.3 • Science 85%

Graph-indexed Pandas DataFrames for analyzing hierarchical performance data

Scientific Software
Updated 9 months ago

climpred — Peer-reviewed • Rank 15.2 • Science 77%

climpred: Verification of weather and climate forecasts - Published in JOSS (2021)

Scientific Software · Peer-reviewed
Updated 9 months ago

poetry • Rank 37.7 • Science 54%

Python packaging and dependency management made easy

Updated 9 months ago

foyer • Rank 14.7 • Science 77%

A package for atom-typing as well as applying and disseminating forcefields