dedupe
:id: A python library for accurate and scalable fuzzy matching, record deduplication and entity-resolution.
geofiles
Evaluation of file formats in the context of geo-referenced 3D geometries.
diffractsim
✨🔬 A flexible diffraction simulator for exploring and visualizing physical optics.
gstools
GSTools - A geostatistical toolbox: random fields, variogram estimation, covariance models, kriging and much more
pydata-wrangler
Wrangle messy numerical, image, and text data into consistent well-organized formats
python-intermediate-development
"Intermediate Research Software Development Skills (Python)" Lesson Material
py3-semver
Python package to work with Semantic Versioning (https://semver.org/)
pypsa-fes
A model that optimises investment and operation, and incorporates flexibility domestic demand flexibility to model scenarios for Great Britain's future energy system.
OpenSkill
OpenSkill: A faster asymmetric multi-team, multiplayer rating system - Published in JOSS (2024)
transposonmapper
This repository contains the code for the transposonmapper package to map the transposons from the SATAY sequencing data.
Container Tree
Container Tree: Software to Model Container Filesystems, Packages, and Inheritance - Published in JOSS (2019)
pythonnumericaldemos
Well-documented Python demonstrations for spatial data analytics, geostatistical and machine learning to support my courses.
imagezmq
A set of Python classes that transport OpenCV images from one computer to another using PyZMQ messaging.
articledownloader
Uses publisher APIs to programmatically retrieve scientific journal articles for text mining.
pycortex
Pycortex is a python-based toolkit for surface visualization of fMRI data
open-grid-emissions
Tools for producing high-quality hourly generation and emissions data for U.S. electric grids
harmonica
Forward modeling, inversion, and processing gravity and magnetic data
sqlmodel
SQL databases in Python, designed for simplicity, compatibility, and robustness.
contextualspellcheck
✔️Contextual word checker for better suggestions (not actively maintained)
celltypist
A tool for semi-automatic cell type classification
OpenOmics
OpenOmics: A bioinformatics API to integrate multi-omics datasets and interface with public databases. - Published in JOSS (2021)
xraylib
A library for X-ray matter interaction cross sections for X-ray fluorescence applications
click-extra
🌈 Drop-in replacement for Click to make user-friendly and colorful CLI
jellyfish
🪼 a python library for doing approximate and phonetic matching of strings.
astroquery
Functions and classes to access online data resources. Maintainers: @keflavich and @bsipocz and @ceb8
meshpy
2D/3D simplicial mesh generator interface for Python (Triangle, TetGen, gmsh)
scikit-surgeryfred
FRED provides an interactive demonstration of fiducial based registration for teaching purposes
gt4sd
GT4SD, an open-source library to accelerate hypothesis generation in the scientific discovery process.
pyprep
PyPREP: A Python implementation of the Preprocessing Pipeline (PREP) for EEG data
susi
SuSi: Python package for unsupervised, supervised and semi-supervised self-organizing maps (SOM)
wrapyfi
Robotics MOM and RPC middleware wrapper with deep-learning framework integration
farm-haystack
AI orchestration framework to build customizable, production-ready LLM applications. Connect components (models, vector DBs, file converters) to pipelines or agents that can interact with your data. With advanced retrieval methods, it's best suited for building RAG, question answering, semantic search or conversational agent chatbots.
nlpo3
Thai natural language processing library in Rust, with Python and Node bindings.
frouros
Frouros: an open-source Python library for drift detection in machine learning systems.
lexicalrichness
:smile_cat: :speech_balloon: A module to compute textual lexical richness (aka lexical diversity).
at3d
Retrieves 3D cloud properties from multi-angle images of reflected solar radiation
py3dep
A part of HyRiver software stack for getting topography data within the US through 3D Elevation Program (3DEP)
psvwave
Forward code for the P-SV wave equation on a staggered grid, with full waveform inversion interfaces. Finite difference approach according to stress-velocity formulation.
litestar
Production-ready, Light, Flexible and Extensible ASGI API framework | Effortlessly Build Performant APIs
emlearn
Machine Learning inference engine for Microcontrollers and Embedded devices
Ciclope
Ciclope: micro Computed Tomography to Finite Elements - Published in JOSS (2023)
omegaconf
Flexible Python configuration system. The last one you will ever need.
datahugger
One downloader for many scientific data and code repositories! DOI :open_hands: Data
geograph
GeoGraph provides a tool for analysing habitat fragmentation and related problems in landscape ecology. GeoGraph builds a geospatially referenced graph from land cover or field survey data and enables graph-based landscape ecology analysis as well as interactive visualizations.
manim
A community-maintained Python framework for creating mathematical animations.
pygeoogc
A part of HyRiver software stack for accessing ArcGIS RESTful-, WFS-, and WMS-based web services.
hyperspectral-regression
Code examples for the book chapter "Supervised, Semi-Supervised and Unsupervised Learning for Hyperspectral Regression".
BisPy
BisPy: Bisimulation in Python - Published in JOSS (2021)