Updated 9 months ago

torchmanager • Rank 8.6 • Science 77%

A generic deep learning training/testing framework for PyTorch

Updated 9 months ago

dedupe • Rank 23.6 • Science 62%

:id: A python library for accurate and scalable fuzzy matching, record deduplication and entity-resolution.

Updated 9 months ago

pubchempy • Rank 21.6 • Science 64%

Python wrapper for the PubChem PUG REST API.

Updated 9 months ago

nengo • Rank 18.5 • Science 67%

A Python library for creating and simulating large-scale brain models

Updated 9 months ago

msdm • Rank 8.5 • Science 77%

Models of Sequential Decision-Making

Updated 9 months ago

diffractsim • Rank 8.4 • Science 77%

✨🔬 A flexible diffraction simulator for exploring and visualizing physical optics.

Updated 9 months ago

hist • Rank 21.3 • Science 64%

Histogramming for analysis powered by boost-histogram

Updated 9 months ago

gstools • Rank 18.2 • Science 67%

GSTools - A geostatistical toolbox: random fields, variogram estimation, covariance models, kriging and much more

Updated 9 months ago

pydata-wrangler • Rank 8.2 • Science 77%

Wrangle messy numerical, image, and text data into consistent well-organized formats

Updated 9 months ago

dnaio • Rank 18.1 • Science 67%

Efficiently read and write sequencing data from Python

Updated 9 months ago

hyppo • Rank 20.7 • Science 64%

Python package for multivariate hypothesis testing

Updated 9 months ago

demerge • Rank 9.7 • Science 75%

:truck: DESHIMA merge code for observed datasets

Updated 9 months ago

pypsa-fes • Rank 7.7 • Science 77%

A model that optimises investment and operation, and incorporates flexibility domestic demand flexibility to model scenarios for Great Britain's future energy system.

Updated 9 months ago

matplotx • Rank 17.6 • Science 67%

:bar_chart: More styles and useful extensions for Matplotlib

Scientific Software
Updated 9 months ago

OpenSkill — Peer-reviewed • Rank 17.5 • Science 67%

OpenSkill: A faster asymmetric multi-team, multiplayer rating system - Published in JOSS (2024)

Updated 9 months ago

dcor • Rank 17.5 • Science 67%

Distance correlation and related E-statistics in Python

Updated 9 months ago

transposonmapper • Rank 7.5 • Science 77%

This repository contains the code for the transposonmapper package to map the transposons from the SATAY sequencing data.

Updated 9 months ago

miepython • Rank 7.4 • Science 77%

Mie scattering of light by perfect spheres

Scientific Software
Updated 9 months ago

Container Tree — Peer-reviewed • Rank 7.3 • Science 77%

Container Tree: Software to Model Container Filesystems, Packages, and Inheritance - Published in JOSS (2019)

Engineering (40%)
Scientific Software · Peer-reviewed
Updated 9 months ago

pythonnumericaldemos • Rank 7.3 • Science 77%

Well-documented Python demonstrations for spatial data analytics, geostatistical and machine learning to support my courses.

Updated 9 months ago

imagezmq • Rank 17.3 • Science 67%

A set of Python classes that transport OpenCV images from one computer to another using PyZMQ messaging.

Updated 9 months ago

articledownloader • Rank 12.2 • Science 72%

Uses publisher APIs to programmatically retrieve scientific journal articles for text mining.

Updated 9 months ago

pycortex • Rank 17.2 • Science 67%

Pycortex is a python-based toolkit for surface visualization of fMRI data

Updated 9 months ago

open-grid-emissions • Rank 7.0 • Science 77%

Tools for producing high-quality hourly generation and emissions data for U.S. electric grids

Updated 9 months ago

forefire • Rank 7.0 • Science 77%

ForeFire is an open-source code for wildland fire spread models

Updated 9 months ago

harmonica • Rank 16.9 • Science 67%

Forward modeling, inversion, and processing gravity and magnetic data

Updated 9 months ago

sqlmodel • Rank 29.9 • Science 54%

SQL databases in Python, designed for simplicity, compatibility, and robustness.

Updated 9 months ago

sidetrack • Rank 8.9 • Science 75%

Simple debug tracing package for Python, with optimization support.

Updated 9 months ago

brainrender • Rank 16.8 • Science 67%

A Python package to visualise neuroanatomical data in atlas space

Updated 9 months ago

celltypist • Rank 16.7 • Science 67%

A tool for semi-automatic cell type classification

Earth and Environmental Sciences (40%) Economics (40%)
Updated 9 months ago

splendaq • Rank 6.7 • Science 77%

Splendid Data Acquisition for small physics experiments

Scientific Software
Updated 9 months ago

OpenOmics — Peer-reviewed • Rank 6.7 • Science 77%

OpenOmics: A bioinformatics API to integrate multi-omics datasets and interface with public databases. - Published in JOSS (2021)

Mathematics Sociology Biology
Scientific Software · Peer-reviewed
Updated 9 months ago

xarray-dataclasses • Rank 16.6 • Science 67%

:zap: xarray data creation by data classes

Updated 9 months ago

islpy • Rank 19.6 • Science 64%

Python wrapper for isl, an integer set library

Updated 9 months ago

click-extra • Rank 16.5 • Science 67%

🌈 Drop-in replacement for Click to make user-friendly and colorful CLI

Updated 9 months ago

jellyfish • Rank 29.4 • Science 54%

🪼 a python library for doing approximate and phonetic matching of strings.

Updated 9 months ago

neat-python • Rank 19.4 • Science 64%

Python implementation of the NEAT neuroevolution algorithm

Updated 9 months ago

astroquery • Rank 24.3 • Science 59%

Functions and classes to access online data resources. Maintainers: @keflavich and @bsipocz and @ceb8

Updated 9 months ago

prmon • Rank 6.2 • Science 77%

Standalone monitor for process resource consumption

Updated 9 months ago

xgcm • Rank 19.2 • Science 64%

python package for analyzing general circulation model output data

Updated 9 months ago

sumt • Rank 6.1 • Science 77%

Computes consensus trees and other phylogenetic tree summaries

Updated 9 months ago

meshpy • Rank 19.1 • Science 64%

2D/3D simplicial mesh generator interface for Python (Triangle, TetGen, gmsh)

Updated 9 months ago

scikit-surgeryfred • Rank 6.0 • Science 77%

FRED provides an interactive demonstration of fiducial based registration for teaching purposes

Updated 9 months ago

gt4sd • Rank 16.0 • Science 67%

GT4SD, an open-source library to accelerate hypothesis generation in the scientific discovery process.

Updated 9 months ago

pyprep • Rank 16.0 • Science 67%

PyPREP: A Python implementation of the Preprocessing Pipeline (PREP) for EEG data

Updated 9 months ago

jcclass • Rank 5.9 • Science 77%

Automated gridded version of the Jenkinson-Collison classification.

Updated 9 months ago

susi • Rank 5.8 • Science 77%

SuSi: Python package for unsupervised, supervised and semi-supervised self-organizing maps (SOM)

Updated 9 months ago

mbuild • Rank 15.8 • Science 67%

A hierarchical, component based molecule builder

Updated 9 months ago

farm-haystack • Rank 28.7 • Science 54%

AI orchestration framework to build customizable, production-ready LLM applications. Connect components (models, vector DBs, file converters) to pipelines or agents that can interact with your data. With advanced retrieval methods, it's best suited for building RAG, question answering, semantic search or conversational agent chatbots.

Updated 9 months ago

nlpo3 • Rank 15.7 • Science 67%

Thai natural language processing library in Rust, with Python and Node bindings.

Updated 9 months ago

lexicalrichness • Rank 15.5 • Science 67%

:smile_cat: :speech_balloon: A module to compute textual lexical richness (aka lexical diversity).

Updated 9 months ago

egu22pygmt • Rank 5.5 • Science 77%

Crafting beautiful maps with PyGMT at EGU22

Updated 9 months ago

geovista • Rank 15.4 • Science 67%

Cartographic rendering and mesh analytics powered by PyVista 🌍

Updated 9 months ago

at3d • Rank 5.3 • Science 77%

Retrieves 3D cloud properties from multi-angle images of reflected solar radiation

Updated 9 months ago

py3dep • Rank 15.3 • Science 67%

A part of HyRiver software stack for getting topography data within the US through 3D Elevation Program (3DEP)

Updated 9 months ago

egglog • Rank 15.1 • Science 67%

Python bindings for the egg-smol rust library

Updated 9 months ago

pymbolic • Rank 18.1 • Science 64%

A simple package to do symbolic math (focus on code gen and DSLs)

Updated 9 months ago

psvwave • Rank 5.1 • Science 77%

Forward code for the P-SV wave equation on a staggered grid, with full waveform inversion interfaces. Finite difference approach according to stress-velocity formulation.

Updated 9 months ago

litestar • Rank 28.0 • Science 54%

Production-ready, Light, Flexible and Extensible ASGI API framework | Effortlessly Build Performant APIs

Scientific Software
Updated 9 months ago

Ciclope — Peer-reviewed • Rank 4.9 • Science 77%

Ciclope: micro Computed Tomography to Finite Elements - Published in JOSS (2023)

Mathematics (34%)
Scientific Software · Peer-reviewed
Updated 9 months ago

omegaconf • Rank 27.8 • Science 54%

Flexible Python configuration system. The last one you will ever need.

Updated 9 months ago

geograph • Rank 9.8 • Science 72%

GeoGraph provides a tool for analysing habitat fragmentation and related problems in landscape ecology. GeoGraph builds a geospatially referenced graph from land cover or field survey data and enables graph-based landscape ecology analysis as well as interactive visualizations.

Updated 9 months ago

relaxed • Rank 9.8 • Science 72%

Provides differentiable versions of common HEP operations and objectives.

Updated 9 months ago

clinker • Rank 14.8 • Science 67%

Gene cluster comparison figure generator

Updated 9 months ago

skosprovider • Rank 14.7 • Science 67%

A python abstraction for SKOS vocabularies

Updated 9 months ago

reacnetgenerator • Rank 14.6 • Science 67%

an automatic reaction network generator for reactive molecular dynamics simulation

Updated 9 months ago

manim • Rank 27.6 • Science 54%

A community-maintained Python framework for creating mathematical animations.

Updated 9 months ago

gcs_python • Rank 4.5 • Science 77%

Graduated cylindrical shell CME model in Python

Updated 9 months ago

pygeoogc • Rank 14.4 • Science 67%

A part of HyRiver software stack for accessing ArcGIS RESTful-, WFS-, and WMS-based web services.

Updated 9 months ago

hyperspectral-regression • Rank 4.4 • Science 77%

Code examples for the book chapter "Supervised, Semi-Supervised and Unsupervised Learning for Hyperspectral Regression".

Scientific Software
Updated 9 months ago

BisPy — Peer-reviewed • Rank 4.4 • Science 77%

BisPy: Bisimulation in Python - Published in JOSS (2021)