stars-reproduce-shoaib-2022
Assessing the computational reproducibility of Shoaib and Ramamohan 2022 as part of STARS.
la-rape-ia
Markov 2000 est une râpe à fromage modifié pour "rapper des mots" grâce au modèle de Markov.
multi-version-pyz-builder
The Multi-Version PYZ Builder Script is a command-line tool designed to create a Universal Python Module optimized for cross-platform and multi-version compatibility. It allows developers to bundle multiple protected .pyc files—each corresponding to a different Python version—into a single .pyz archive.
neuropyxels
NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a pythonist who really did not want to transition to MATLAB to work with Neuropixels: it features a suite of core utility functions for loading, processing and plotting Neuropixels data.
secure-python-code-manager
The Secure Python Code Manager is an innovative solution for developers looking to share Python code securely, protect their Python code, and implement Python code encryption techniques. By leveraging the Alpha Beta Network cloud platform, this tool addresses the challenges of secure code sharing and source code protection.
https://github.com/bagnasconicolo/speck
SPECK is an open‑source collection of utilities and datasets for the visualisation and analysis of optical spectra. It targets educational settings where simple yet powerful tools are needed to handle Horiba .LAB files or standard CSV data.
saqc
This is a read-only mirror, comments, issues and pull requests are very welcome on https://git.ufz.de/rdm-software/saqc.
black
optimagic
optimagic is a Python package for numerical optimization. It is a unified interface to optimizers from SciPy, NlOpt and other packages. optimagic's minimize function works just like SciPy's, so you don't have to adjust your code. You simply get more optimizers for free. On top you get diagnostic tools, parallel numerical derivatives and more.
https://github.com/cadquery/pywrap
C++ binding generator based on libclang and pybind11
https://github.com/devidw/coverimagegenerator
Generate Cover Images for your blog articles
spack
A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
https://github.com/bamresearch/analyse_dls_with_contin
This repository contains Python code and a Jupyter Notebook running the original CONTIN program by S. Provencher on every DLS measurement (dynamic light scattering, aka. photon correlation spectroscopy, PCS) read from *.ASC files.
https://github.com/acdh-oeaw/transkribus2arche
Scripts and utility functions to ingest Transkribus Data into ARCHE
topologyml-electrode-polarization
Code accompanying the paper "Topology-Informed Machine Learning for Efficient Prediction of Solid Oxide Fuel Cell Electrode Polarization" by M. Szemer, Sz. Buchaniec, M. Prokop, and G. Brus
https://github.com/althonos/elabackup
Quick and dirty CLI app to backup an eLabFTW instance using the HTTP API
ngl_tools
A collection of tools developed by the Next Generation Liquefaction modelers.
ganx
The GitHub repository for the Python package ganX - generate artificially new XRF
intro_python_ismb2022
medical-analysis-assistant
a web appplication to assist with heart disease prediction, skin cancer and tubercolosis detection also with a health chatbot.
https://github.com/amirzenoozi/aparat-videos-dataset
Some Simple Information About Aparat Videos for DataScientists
glamod-marine-processing
Code and configuration for GLAMOD marine data processing
gpt-engineer
CLI platform to experiment with codegen. Precursor to: https://lovable.dev
pyleco
Python implementation of the Laboratory Experiment COntrol (LECO) protocol
gempy
GemPy is an open-source, Python-based 3-D structural geological modeling software, which allows the implicit (i.e. automatic) creation of complex geological models from interface and orientation data. It also offers support for stochastic modeling to address parameter and model uncertainties.
unitary
API library providing common operations for adding quantum behaviors to games.
https://github.com/amr-yasser226/deep-dive-python
A personal record of Python concepts I explore — from everyday features to advanced techniques. Includes examples, explanations, and deep dives into the language’s inner workings.
https://github.com/beatawereszczynska/k-space_masking_for_mri_denoising
Graduate k-space masking for MRI image denoising and blurring (on the example of Agilent FID data). (Python 3)
speclet
A Bayesian hierarchical model to discover tissue-specific cancer driver genes and synthetic lethal interactions from CRISPR/Cas9 LoF screens.
https://github.com/b612-asteroid-institute/precovery
Fast precovery of small body observations at scale
mysql-mcp-server
A comprehensive Model Context Protocol (MCP) server for MySQL databases with 200+ tools for advanced database management, diagnostics, performance analysis, security auditing, and AI-powered database interactions.
figuratenum
Figuratenum is the most comprehensive Python library for figurate numbers, capable of generating up to 233 different sequences across various dimensions and generalizations. Based on the book ‘Figurate Numbers’ (2012) by Elena Deza and Michel Deza.
https://github.com/alan-turing-institute/intro-to-transparent-ml-course
An Introduction to Transparent Machine Learning
https://github.com/csinva/dnn-experiments
A set of scripts and experiments making it easier to analyze deep learning empirically.
python_to_grbl
A simple open-source python 🐍 to grbl 🤖 sender || Controlling 3-axis GRBL/CNC/gcode machines with python over a serial/usb connection that waits for completion of movement before sending the next command
eu-zevam
This repository presents a European passenger car stock model. It allows to model the future powertrain composition of the European vehicle fleet under different scenarios. It also presents different sensitivity analysis performed. This code is used to analyze the European BEV stock fleet up to 2050.
rapidx
A toolbox that integrates with PyTorch-Lightning which helps in running and managing multiple codebases
radarpipeline
A python feature generation and visualzation package use with RADAR project data.
stats-biogeo-2021
Extracting and processing data from MIT's Darwin model, and applying statistical learning methods. In support of submitted manuscript.
streamad
Online anomaly detection for data streams/ Real-time anomaly detection for time series data.
the-real-genotools
GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comprehensive sample/variant QC, and ancestry estimation. Ideal for computational biology and genetics research.
cosima-recipes
A cookbook 📒 of recipes (i.e., examples) for analysing ocean and sea ice model output. 👩🏽🍳🌊👨🏻🍳
beshie-mental-health-chatbot
Beshie is here to help you navigate through your emotions and provide you with the guidance you need to feel better.
https://github.com/becksteinlab/gromacswrapper.analysis
Legacy code from GromacsWrapper: gromacs.analysis module
wolfsoftware.drawlines
A python package that allows you to draw multiple different types of lines on the console.
cap
HPC workflow that automates the tedious actions of compiling, analyzing, and parsing with bincfg
SpectriPy
SpectriPy: Enhancing Cross-Language Mass Spectrometry Data Analysis with R and Python - Published in JOSS (2025)
ua-opc-interface
This UA OPC Interface is a Python-based application that provides a versatile and user-friendly interface for controlling laboratory pumps via OPC UA protocol. This application is specifically tailored for such applications, allowing users to automate and monitor the operation of pumps with ease and accuracy.
comparative-embedding-visualization
A Jupyter widget for comparing two embeddings with shared labels by their confusion, neighborhoods, and size.
multi-shared-task-self-supervised-cnn-lstm
Multi-shared-task Self-supervised Learning utilizing CNN-LSTM network
runnable-python
A collection of beginner Python excercises runnable in your browser
bildersammlung-buddhismus-public
Dataset of the University of Basel's research seminar "Indexing and Digital Processing of a Historical Image Collection on the Appropriation of Buddhism in the West"
deep_learning_topology_opt
Code for paper "Self-Directed Online Machine Learning for Topology Optimization"
MRN-AI-Plate-Parameter-Estimation
Machine Learning for Solving the Inverse Problem of Estimating Plate Properties from Modal Responses
sonnet-automation-code
Tools designed to extract Resonant Frequency & Coupling Quality Factor for Microwave Kinetic Inductance Detector Simulations using a Sonnet .csv data file.