TextWiller
TextWiller: Collection of functions for text mining, specially devoted to the Italian language - Published in JOSS (2019)
CoastalLens
CoastalLens: A MATLAB UAV Video Stabilization & Rectification Framework - Published in JOSS (2024)
Oetqf: A Julia package for quasi-dynamic earthquake cycle simulation
Oetqf: A Julia package for quasi-dynamic earthquake cycle simulation - Published in JOSS (2025)
PyBWE
PyBWE: Python tools for Bandwidth Extrapolation of planetary radar signals - Published in JOSS (2024)
VlaPy
VlaPy: A Python package for Eulerian Vlasov-Poisson-Fokker-Planck Simulations - Published in JOSS (2020)
Surjectors
Surjectors: surjection layers for density estimation with normalizing flows - Published in JOSS (2024)
MyPTV
MyPTV: A Python Package for 3D Particle Tracking - Published in JOSS (2022)
DuoDIC
DuoDIC: 3D Digital Image Correlation in MATLAB - Published in JOSS (2022)
pytransform3d
pytransform3d: 3D Transformations for Python - Published in JOSS (2019)
hei
hei: Calculate Healthy Eating Index (HEI) Scores - Published in JOSS (2017)
QuaCa
QuaCa: an open-source library for fast calculations of steady-state quantum friction - Published in JOSS (2023)
plotastic
plotastic: Bridging Plotting and Statistics in Python - Published in JOSS (2024)
TraitDB
TraitDB: Web application database of phenotypic trait data. - Published in JOSS (2019)
MAHOS
MAHOS: Measurement Automation Handling and Orchestration System - Published in JOSS (2023)
MetaGenePipe
MetaGenePipe: An Automated, Portable Pipeline for Contig-based Functional and Taxonomic Analysis - Published in JOSS (2023)
morphMan
morphMan: Automated manipulation of vascular geometries - Published in JOSS (2019)
JetFuelBurn: A Python package for calculating fuel burn of commercial aircraft
JetFuelBurn: A Python package for calculating fuel burn of commercial aircraft - Published in JOSS (2026)
QXTools
QXTools: A Julia framework for distributed quantum circuit simulation - Published in JOSS (2022)
GORILLA
GORILLA: Guiding-center ORbit Integration with Local Linearization Approach - Published in JOSS (2023)
3D reconstruction toolbox for behavior tracked with multiple cameras
3D reconstruction toolbox for behavior tracked with multiple cameras - Published in JOSS (2020)
PostcodesioR
PostcodesioR: An R package for UK geocoding - Published in JOSS (2023)
ElGateau
ElGateau: A Library for Using the Elgato Stream Deck for Experimental Psychology Research - Published in JOSS (2018)
pykeen
🤖 A Python library for learning and evaluating knowledge graph embeddings
gdess
gdess: A framework for evaluating simulated atmospheric CO₂ in Earth System Models - Published in JOSS (2022)
hopit
hopit: An R Package for Analysis of Reporting Behavior Using Generalized Ordered Probit Models - Published in JOSS (2019)
GO-RXR
GO-RXR: Global Optimization of Resonant X-ray Reflectometry - Published in JOSS (2025)
airflow-provider-vineyard
vineyard (v6d): an in-memory immutable data manager. (Project under CNCF, TAG-Storage)
wristpy: Fast, User-Friendly Python Processing of Wrist-worn Accelerometer Data
wristpy: Fast, User-Friendly Python Processing of Wrist-worn Accelerometer Data - Published in JOSS (2025)
Ellip: An Elliptic Integral Library for Rust
Ellip: An Elliptic Integral Library for Rust - Published in JOSS (2026)
hebbRNN
hebbRNN: A Reward-Modulated Hebbian Learning Rule for Recurrent Neural Networks - Published in JOSS (2016)
shipgrav
shipgrav: A Python package for marine gravimetry - Published in JOSS (2024)
FASMA 2.0
FASMA 2.0: A Python package for stellar parameters and chemical abundances - Published in JOSS (2020)
getTBinR
getTBinR: an R package for accessing and summarising the World Health Organisation Tuberculosis data - Published in JOSS (2019)
PyCVI
PyCVI: A Python package for internal Cluster Validity Indices, compatible with time-series data - Published in JOSS (2024)
lattice-symmetries
lattice-symmetries: A package for working with quantum many-body bases - Published in JOSS (2021)
Cthulhu
Cthulhu: An Open Source Molecular and Atomic Cross Section Computation Code for Substellar Atmospheres - Published in JOSS (2024)
The stantargets R package
The stantargets R package: a workflow framework for efficient reproducible Stan-powered Bayesian data analysis pipelines - Published in JOSS (2021)
strucscan
strucscan: A lightweight Python-based framework for high-throughput material simulation - Published in JOSS (2022)
IGRINS RV
IGRINS RV: A Python Package for Precision Radial Velocities with Near-Infrared Spectra - Published in JOSS (2021)
ScenTrees.jl
ScenTrees.jl: A Julia Package for Generating Scenario Trees and Scenario Lattices for Multistage Stochastic Programming - Published in JOSS (2020)
WGS2NCBI - Toolkit for preparing genomes for submission to NCBI
WGS2NCBI - Toolkit for preparing genomes for submission to NCBI - Published in JOSS (2019)
remBoot
remBoot: An R package for Random Encounter Modelling - Published in JOSS (2017)
RTMsim - A Julia module for filling simulations in Resin Transfer Moulding with the Finite Area Method
RTMsim - A Julia module for filling simulations in Resin Transfer Moulding with the Finite Area Method - Published in JOSS (2023)
MiNAA
MiNAA: Microbiome Network Alignment Algorithm - Published in JOSS (2024)
hmis
hmis: A python tool to visualize and analyze HMIS data - Published in JOSS (2017)
DscoreApp
DscoreApp: An user-friendly web application for computing the Implicit Association Test D-score - Published in JOSS (2019)
minorbsem
minorbsem: An R package for structural equation models that account for the influence of minor factors - Published in JOSS (2023)
CliquePercolation
CliquePercolation: An R Package for conducting and visualizing results of the clique percolation network community detection algorithm - Published in JOSS (2021)
tissueloc
tissueloc: Whole slide digital pathology image tissue localization - Published in JOSS (2019)
text2map
text2map: R Tools for Text Matrices - Published in JOSS (2022)
TrackSegNet
TrackSegNet: a tool for trajectory segmentation into diffusive states using supervised deep learning - Published in JOSS (2024)
COSMO
COSMO: Accelerated ADMM-based solver for convex conic optimisation problems (LP, QP, SOCP, SDP, ExpCP, PowCP). Automatic chordal decomposition of sparse semidefinite programs.
VCC
VCC: A framework for building containerized reproducible cluster software environments - Published in JOSS (2017)
MultichannelGPR
MultichannelGPR: A MATLAB tool for Ground Penetrating Radar data processing - Published in JOSS (2024)
Genotify
Genotify: Fast, lightweight gene lookup and summarization - Published in JOSS (2018)
microViz
microViz: an R package for microbiome data visualization and statistics - Published in JOSS (2021)
NLSIG-COVID19Lab
NLSIG-COVID19Lab: A modern logistic-growth tool (nlogistic-sigmoid) for descriptively modelling the dynamics of the COVID-19 pandemic process - Published in JOSS (2021)
AIgarMIC
AIgarMIC: a Python package for automated interpretation of agar dilution minimum inhibitory concentration assays - Published in JOSS (2024)
Masks2Metrics (M2M)
Masks2Metrics (M2M): A Matlab Toolbox for Gold Standard Morphometrics - Published in JOSS (2018)
EMBERS
EMBERS: Experimental Measurement of BEam Responses with Satellites - Published in JOSS (2020)
umpire
An application-focused API for memory management on NUMA & GPU architectures
GMSimViz
GMSimViz: Automated 3D Visualization of Ground Motion Simulation with Generic Mapping Tools (GMT) - Published in JOSS (2019)
cdcam
cdcam: Cambridge Digital Communications Assessment Model - Published in JOSS (2020)
ysoisochrone
ysoisochrone: A Python package to estimate masses and ages for YSOs - Published in JOSS (2025)
fairchem-core
FAIR Chemistry's library of machine learning methods for chemistry
<strong>geospaNN</strong>: A Python package for geospatial neural networks
<strong>geospaNN</strong>: A Python package for geospatial neural networks - Published in JOSS (2026)
E2EDNA 2.0
E2EDNA 2.0: Python Pipeline for Simulating DNA Aptamers with Ligands - Published in JOSS (2022)
gwdegree
gwdegree: Improving interpretation of geometrically-weighted degree estimates in exponential random graph models - Published in JOSS (2016)
NodeLab
NodeLab: A MATLAB package for meshfree node-generation and adaptive refinement - Published in JOSS (2019)
PourPy - A python package to generate potential-pH diagrams
PourPy - A python package to generate potential-pH diagrams - Published in JOSS (2024)
CheSweet
CheSweet: An application to predict glycan’s chemicals shifts - Published in JOSS (2018)
SlicerITKUltrasound
SlicerITKUltrasound: A 3D Slicer extension for scan conversion of B-mode and next-generation ultrasound imaging modalities - Published in JOSS (2017)
tesliper
tesliper: a theoretical spectroscopist's little helper - Published in JOSS (2022)
BioSigKit
BioSigKit: A Matlab Toolbox and Interface for Analysis of BioSignals - Published in JOSS (2018)
Rule-based integration
Rule-based integration: An extensive system of symbolic integration rules - Published in JOSS (2018)
zfit
Model manipulation and fitting library based on TensorFlow and optimised for simple and direct manipulation of probability density functions. Its main focus is on scalability, parallelisation and user friendly experience.
Tidytacos
Tidytacos: An R package for analyses on taxonomic composition of microbial communities - Published in JOSS (2025)
BoltzMM
BoltzMM: an R package for maximum pseudolikelihood estimation of fully-visible Boltzmann machines - Published in JOSS (2019)
obscura
obscura: A modular C++ tool and library for the direct detection of (sub-GeV) dark matter via nuclear and electron recoils - Published in JOSS (2021)
NoisySignalIntegration.jl
NoisySignalIntegration.jl: A Julia package for uncertainty evaluation of numeric integrals - Published in JOSS (2021)
StoSpa2
StoSpa2: A C++ software package for stochastic simulations of spatially extended systems - Published in JOSS (2020)
Simulated Diffusion in Realistic Imaging Features of Tissue (Sim-DRIFT)
Simulated Diffusion in Realistic Imaging Features of Tissue (Sim-DRIFT) - Published in JOSS (2023)
js-emass
js-emass: A flexible JavaScript implementation of the emass algorithm - Published in JOSS (2018)
PyAFBF
PyAFBF: a Python library for sampling image textures from the anisotropic fractional Brownian field. - Published in JOSS (2022)