MSG
MSG: A software package for interpolating stellar spectra in pre-calculated grids - Published in JOSS (2023)
UPOsHam
UPOsHam: A Python package for computing unstable periodic orbits in two-degree-of-freedom Hamiltonian systems - Published in JOSS (2020)
papaya2
papaya2: 2D Irreducible Minkowski Tensor computation - Published in JOSS (2020)
TransiFlow: A Python package for performing bifurcation analysis on fluid flow problems
TransiFlow: A Python package for performing bifurcation analysis on fluid flow problems - Published in JOSS (2026)
Virtual Engineering: Python framework for engineering process design
Virtual Engineering: Python framework for engineering process design - Published in JOSS (2025)
HuracanPy
HuracanPy: A Python package for reading and analysing cyclone tracks - Published in JOSS (2025)
ecopath_matlab
ecopath_matlab: A Matlab-based implementation of the Ecopath food web algorithm - Published in JOSS (2017)
Estimating statistics from multi-state models using simulation with multistateutils
Estimating statistics from multi-state models using simulation with multistateutils - Published in JOSS (2018)
Paraqus
Paraqus: Exporting Finite Element Simulation Results from Abaqus to VTK - Published in JOSS (2025)
Umami
Umami: A Python toolkit for jet flavour tagging - Published in JOSS (2024)
Eyestream
Eyestream: An Open WebSocket-based Middleware for Serializing and Streaming Eye Tracker Event Data from Gazepoint GP3 HD Research Hardware - Published in JOSS (2019)
The ppmData R-package for setting up spatial point process models
The ppmData R-package for setting up spatial point process models - Published in JOSS (2023)
datasets
🤗 The largest hub of ready-to-use datasets for AI models with fast, easy-to-use and efficient data manipulation tools
TextWiller
TextWiller: Collection of functions for text mining, specially devoted to the Italian language - Published in JOSS (2019)
Oetqf: A Julia package for quasi-dynamic earthquake cycle simulation
Oetqf: A Julia package for quasi-dynamic earthquake cycle simulation - Published in JOSS (2025)
CoastalLens
CoastalLens: A MATLAB UAV Video Stabilization & Rectification Framework - Published in JOSS (2024)
VlaPy
VlaPy: A Python package for Eulerian Vlasov-Poisson-Fokker-Planck Simulations - Published in JOSS (2020)
Surjectors
Surjectors: surjection layers for density estimation with normalizing flows - Published in JOSS (2024)
PyBWE
PyBWE: Python tools for Bandwidth Extrapolation of planetary radar signals - Published in JOSS (2024)
MyPTV
MyPTV: A Python Package for 3D Particle Tracking - Published in JOSS (2022)
DuoDIC
DuoDIC: 3D Digital Image Correlation in MATLAB - Published in JOSS (2022)
pytransform3d
pytransform3d: 3D Transformations for Python - Published in JOSS (2019)
QuaCa
QuaCa: an open-source library for fast calculations of steady-state quantum friction - Published in JOSS (2023)
hei
hei: Calculate Healthy Eating Index (HEI) Scores - Published in JOSS (2017)
plotastic
plotastic: Bridging Plotting and Statistics in Python - Published in JOSS (2024)
TraitDB
TraitDB: Web application database of phenotypic trait data. - Published in JOSS (2019)
MAHOS
MAHOS: Measurement Automation Handling and Orchestration System - Published in JOSS (2023)
MetaGenePipe
MetaGenePipe: An Automated, Portable Pipeline for Contig-based Functional and Taxonomic Analysis - Published in JOSS (2023)
morphMan
morphMan: Automated manipulation of vascular geometries - Published in JOSS (2019)
JetFuelBurn: A Python package for calculating fuel burn of commercial aircraft
JetFuelBurn: A Python package for calculating fuel burn of commercial aircraft - Published in JOSS (2026)
QXTools
QXTools: A Julia framework for distributed quantum circuit simulation - Published in JOSS (2022)
GORILLA
GORILLA: Guiding-center ORbit Integration with Local Linearization Approach - Published in JOSS (2023)
PostcodesioR
PostcodesioR: An R package for UK geocoding - Published in JOSS (2023)
ElGateau
ElGateau: A Library for Using the Elgato Stream Deck for Experimental Psychology Research - Published in JOSS (2018)
3D reconstruction toolbox for behavior tracked with multiple cameras
3D reconstruction toolbox for behavior tracked with multiple cameras - Published in JOSS (2020)
pykeen
🤖 A Python library for learning and evaluating knowledge graph embeddings
gdess
gdess: A framework for evaluating simulated atmospheric CO₂ in Earth System Models - Published in JOSS (2022)
hopit
hopit: An R Package for Analysis of Reporting Behavior Using Generalized Ordered Probit Models - Published in JOSS (2019)
Raster Tools: An Open Source Toolbox for Raster Processing
Raster Tools: An Open Source Toolbox for Raster Processing - Published in JOSS (2026)
GO-RXR
GO-RXR: Global Optimization of Resonant X-ray Reflectometry - Published in JOSS (2025)
airflow-provider-vineyard
vineyard (v6d): an in-memory immutable data manager. (Project under CNCF, TAG-Storage)
wristpy: Fast, User-Friendly Python Processing of Wrist-worn Accelerometer Data
wristpy: Fast, User-Friendly Python Processing of Wrist-worn Accelerometer Data - Published in JOSS (2025)
Ellip: An Elliptic Integral Library for Rust
Ellip: An Elliptic Integral Library for Rust - Published in JOSS (2026)
hebbRNN
hebbRNN: A Reward-Modulated Hebbian Learning Rule for Recurrent Neural Networks - Published in JOSS (2016)
FASMA 2.0
FASMA 2.0: A Python package for stellar parameters and chemical abundances - Published in JOSS (2020)
getTBinR
getTBinR: an R package for accessing and summarising the World Health Organisation Tuberculosis data - Published in JOSS (2019)
shipgrav
shipgrav: A Python package for marine gravimetry - Published in JOSS (2024)
PyCVI
PyCVI: A Python package for internal Cluster Validity Indices, compatible with time-series data - Published in JOSS (2024)
lattice-symmetries
lattice-symmetries: A package for working with quantum many-body bases - Published in JOSS (2021)
Cthulhu
Cthulhu: An Open Source Molecular and Atomic Cross Section Computation Code for Substellar Atmospheres - Published in JOSS (2024)
The stantargets R package
The stantargets R package: a workflow framework for efficient reproducible Stan-powered Bayesian data analysis pipelines - Published in JOSS (2021)
strucscan
strucscan: A lightweight Python-based framework for high-throughput material simulation - Published in JOSS (2022)
IGRINS RV
IGRINS RV: A Python Package for Precision Radial Velocities with Near-Infrared Spectra - Published in JOSS (2021)
ScenTrees.jl
ScenTrees.jl: A Julia Package for Generating Scenario Trees and Scenario Lattices for Multistage Stochastic Programming - Published in JOSS (2020)
WGS2NCBI - Toolkit for preparing genomes for submission to NCBI
WGS2NCBI - Toolkit for preparing genomes for submission to NCBI - Published in JOSS (2019)
remBoot
remBoot: An R package for Random Encounter Modelling - Published in JOSS (2017)
RTMsim - A Julia module for filling simulations in Resin Transfer Moulding with the Finite Area Method
RTMsim - A Julia module for filling simulations in Resin Transfer Moulding with the Finite Area Method - Published in JOSS (2023)
minorbsem
minorbsem: An R package for structural equation models that account for the influence of minor factors - Published in JOSS (2023)
MiNAA
MiNAA: Microbiome Network Alignment Algorithm - Published in JOSS (2024)
hmis
hmis: A python tool to visualize and analyze HMIS data - Published in JOSS (2017)
DscoreApp
DscoreApp: An user-friendly web application for computing the Implicit Association Test D-score - Published in JOSS (2019)
CliquePercolation
CliquePercolation: An R Package for conducting and visualizing results of the clique percolation network community detection algorithm - Published in JOSS (2021)
tissueloc
tissueloc: Whole slide digital pathology image tissue localization - Published in JOSS (2019)
text2map
text2map: R Tools for Text Matrices - Published in JOSS (2022)
TrackSegNet
TrackSegNet: a tool for trajectory segmentation into diffusive states using supervised deep learning - Published in JOSS (2024)
COSMO
COSMO: Accelerated ADMM-based solver for convex conic optimisation problems (LP, QP, SOCP, SDP, ExpCP, PowCP). Automatic chordal decomposition of sparse semidefinite programs.
VCC
VCC: A framework for building containerized reproducible cluster software environments - Published in JOSS (2017)
MultichannelGPR
MultichannelGPR: A MATLAB tool for Ground Penetrating Radar data processing - Published in JOSS (2024)
Genotify
Genotify: Fast, lightweight gene lookup and summarization - Published in JOSS (2018)
microViz
microViz: an R package for microbiome data visualization and statistics - Published in JOSS (2021)
NLSIG-COVID19Lab
NLSIG-COVID19Lab: A modern logistic-growth tool (nlogistic-sigmoid) for descriptively modelling the dynamics of the COVID-19 pandemic process - Published in JOSS (2021)
Masks2Metrics (M2M)
Masks2Metrics (M2M): A Matlab Toolbox for Gold Standard Morphometrics - Published in JOSS (2018)
AIgarMIC
AIgarMIC: a Python package for automated interpretation of agar dilution minimum inhibitory concentration assays - Published in JOSS (2024)
EMBERS
EMBERS: Experimental Measurement of BEam Responses with Satellites - Published in JOSS (2020)
umpire
An application-focused API for memory management on NUMA & GPU architectures
GMSimViz
GMSimViz: Automated 3D Visualization of Ground Motion Simulation with Generic Mapping Tools (GMT) - Published in JOSS (2019)
cdcam
cdcam: Cambridge Digital Communications Assessment Model - Published in JOSS (2020)
ysoisochrone
ysoisochrone: A Python package to estimate masses and ages for YSOs - Published in JOSS (2025)
fairchem-core
FAIR Chemistry's library of machine learning methods for chemistry
<strong>geospaNN</strong>: A Python package for geospatial neural networks
<strong>geospaNN</strong>: A Python package for geospatial neural networks - Published in JOSS (2026)
E2EDNA 2.0
E2EDNA 2.0: Python Pipeline for Simulating DNA Aptamers with Ligands - Published in JOSS (2022)
gwdegree
gwdegree: Improving interpretation of geometrically-weighted degree estimates in exponential random graph models - Published in JOSS (2016)
NodeLab
NodeLab: A MATLAB package for meshfree node-generation and adaptive refinement - Published in JOSS (2019)
PourPy - A python package to generate potential-pH diagrams
PourPy - A python package to generate potential-pH diagrams - Published in JOSS (2024)
CheSweet
CheSweet: An application to predict glycan’s chemicals shifts - Published in JOSS (2018)
tesliper
tesliper: a theoretical spectroscopist's little helper - Published in JOSS (2022)
SlicerITKUltrasound
SlicerITKUltrasound: A 3D Slicer extension for scan conversion of B-mode and next-generation ultrasound imaging modalities - Published in JOSS (2017)
BioSigKit
BioSigKit: A Matlab Toolbox and Interface for Analysis of BioSignals - Published in JOSS (2018)