Chaste
Chaste: Cancer, Heart and Soft Tissue Environment - Published in JOSS (2020)
Learning Simulator
Learning Simulator: A simulation software for animal and human learning - Published in JOSS (2021)
JuMP
Modeling language for Mathematical Optimization (linear, mixed-integer, conic, semidefinite, nonlinear)
infomeasure
Python package for calculating various information measures, including entropy, mutual information, transfer entropy, and more, with support for both discrete and continuous variables.
pomp
R package for statistical inference using partially observed Markov processes
NeuroDiffEq
NeuroDiffEq: A Python package for solving differential equations with neural networks - Published in JOSS (2020)
https://github.com/cog-imperial/omlt
Represent trained machine learning models as Pyomo optimization formulations
https://github.com/biosimulators/biosimulators_test_suite
Tool for validating that biosimulation software tools implement the BioSimulators standards for simulators
planet-smart-city-laguna-iot-pucsp
⚡️ Final extension project by the Center for Data Science and Artificial Intelligence at PUC-SP. This initiative applies AI, IoT, and data-driven strategies to optimize water and energy systems in the Smart City Laguna (Fortaleza, Brazil), in collaboration with Proptech, Planet Smart City, UN-Habitat and Starlink. 💦
https://github.com/anuragagrawaal/pyportfolioanalysis
'Portfolio Analysis, methods for portfolio optimization'
.github
✯ Empowering businesses with AI-driven technologies like Copilots, Agents, Bots, and Predictions, alongside intelligent Decision-Making Suppor
modelling-saccharomyces-cerevisiae-for-the-production-of-fermented-beverages-beer-2024-
In this work, we formulate a mechanistic model consisting of three first-order Ordinary Differential Equations (ODEs) to describe ethanol production for mezcal by the Saccharomyces cerevisiae yeast using glucose and fructose as substrates.
co2_flux_error_correlation_analysis
Codes for calculation of temporal correlations in model-data differences, creating and fitting mathematical models, and cross-validating the fits.
saccharomyces-cerevisiae-modelling-and-nonlinear-regression-with-normalized-data
Mathematical modeling and fitting by non-linear regression to experimental data in an alcoholic fermentation by the Saccharomyces cerevisiae yeast
appredict
Cardiac Action Potential Prediction (ApPredict) under drug-induced block of ion channels. This is a Chaste extension/bolt-on project.
mathmoddb
The repo for MathModDB, the model ontology and knowledge graph developed by MaRDI TA4
https://github.com/angrymaciek/warlock
Warlock is a snakemake workflow to spawn multiple demons (deme-based oncology models) as jobs running around on a cluster environment 😈😈
biosimulators_simulator_template
Template for a repository for building a BioSimulators-compliant command-line interface and Dockerfile for a biosimulation program
optimization-simulation-mathmodeling-linearprogramming
Integrated Mathematics Projects - LOGISTICS, FINANCE, CREDIT, ENGINEERING, HEALTH AND OTHERS
likelihoodbasedprofilewiseanalysis.jl
Julia package which implements and explores the Likelihood-based Profile Wise Analysis workflow for uncertainty quantification