grabseqs
A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
https://github.com/compwa/sphinx-hep-pdgref
Sphinx role for linking to PDG reviews and listing
https://github.com/broadinstitute/longbow
Annotation and segmentation of MAS-seq data
https://github.com/blakenaccarato/propshop
Your one-stop shop for material properties.
twython
Actively maintained, pure Python wrapper for the Twitter API. Supports both normal and streaming Twitter APIs.
https://github.com/basedosdados/analises
📊 Repositório de códigos simples e replicáveis das análises publicadas.
open-sdg
A platform for collecting and disseminating data for the Sustainable Development Goal global indicators.
https://github.com/bodenmillergroup/napari-czifile2
Carl Zeiss Image (.czi) file support for napari
hidradenitis
An R package to calculate clinical scores for hidradenitis suppurativa (HS), a dermatologic disease
https://github.com/cargo-bins/release-pr
GitHub Action to create a release PR using cargo-release — soft deprecated: try release-plz instead!
microbiomeDASim
Tools to simulate longitudinal differential abundance for microbiome data
https://github.com/azavea/cac-tripplanner
Clean Air Council Circuit Trip Planner and Travelshed
dane
Utils for working with the Distributed Annotation 'n' Enrichment (DANE) system
https://github.com/alpha-unito/jupyter-workflow
Distributed workflows design and execution with Jupyter Notebooks.
bslib
Database with battery parameters based on PerMod (HTW Berlin) as well as functions in order to simulate battery storages (manufacturer+model or generic type)
https://github.com/crowdstrike/alloy-react
React + PatternFly building blocks for Foundry UI's
https://github.com/commoncrawl/cc-pyspark
Process Common Crawl data with Python and Spark
https://github.com/c0sogi/python-dcm
A high-performance Python package for handling ETAS DCM(Data Conversion Format) files used in engine calibration tools like INCA, MDA, EHANDBOOK, and CANape.
multifear
A suite of functions for running multiverse analyses for fear conditioning data.
carpoolear
The open source Vue.js frontend (mobile and cordova app) for the argentinian carpooling application: Carpoolear
https://github.com/biojulia/biomakie.jl
Plotting and interface tools for biology.
https://github.com/cqcl/pytket-stim
pytket-stim, extensions for pytket quantum SDK
giessdenkiez-de
The consequences of climate change, especially the dry and hot summers, are putting a strain on Berlin's ecosystem. Our urban trees are drying out and suffering long-term damage. Gieß den Kiez is made to enable coordinated citizen participation in the irrigation of urban trees.
https://github.com/comunica/comunica-feature-versioning
📬 Comunica packages for query execution over RDF archives
https://github.com/andrew/vers
A Ruby gem for parsing, comparing and sorting versions according to the VERS spec.
https://github.com/bionanoimaging/ndtools.jl
A lightweight package for utility functions for working with multi-dimensional data
https://github.com/cheminfo/iframe-bridge
Communicate between iframes and a control page
https://github.com/geoscienceaustralia/ginan
The Australian Government, through Positioning Australia (part of Geoscience Australia), is funding the design, development and operational service of a Global Navigation Satellite System (GNSS) position correction system - the Ginan service and toolkit. The application of the Ginan correction service by a GNSS device has the potential to increase positioning accuracy from meters to centimetres across Australia. The suite of software systems in this repository (the Ginan toolkit) will be used to create the service. It is available now under an open source licence. Ginan will give individuals and organisations no-cost access to the Ginan software and service as a public good.
crux-top-lists
Downloadable snapshots of the Chrome Top Million Websites pulled from public CrUX data in Google BigQuery.
tophat-recondition
Post-processor for TopHat unmapped.bam files making them usable by downstream software.
geospatial-data-catalogs
A list of open geospatial datasets available on AWS, Earth Engine, Planetary Computer, NASA CMR, and STAC Index
https://github.com/deepset-ai/deepset-mcp-server
MCP Server for deepset platform
argparse2tool
transparently build CWL and Galaxy XML tool definitions for any script that uses argparse
https://github.com/biojulia/biogenerics.jl
Generic methods, types and modules for the BioJulia ecosystem.
gastempt
A package and a Shiny web application to create simulated gastric emptying data, and to analyze experimental gastric emptying data using population fit with R and package nlme. Use the Docker image (https://hub.docker.com/u/dmenne) for easy installation. Documentation:
https://github.com/commoncrawl/web-languages
Crowd-sourced lists of urls to help Common Crawl crawl under-resourced languages. See https://github.com/commoncrawl/web-languages-code/ for the code
https://github.com/cytoscape/cytoscape.js-spread
The speedy Spread physics simulation layout for Cytoscape.js
https://github.com/connor-makowski/pythonbq
Python wrapper for easy use of big query
sanitizers
Sample R package with C/C++ code to trigger Address and Undefined Behaviour Sanitizers
DGM
Dynamical graphical models for multivariate time series data to estimate directed dynamic relationships in networks.
https://github.com/datamade/how-to
📚 Doing all sorts of things, the DataMade way
oncoscanR
OncoscanR is an R package to handle Copy Number Variation analyses originating from the Oncoscan assay (Affymetrix). It allows computation of different homologous recombination deficiency (HRD) scores and the tandem duplication plus score (TDplus) to identify CDK12-mutated tumors (Popova et al., Cancer Res 2016). The package also allows for identification of arm-level alterations (e.g. gain of chromosome arm 1p).