grabseqs
A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
https://github.com/c0sogi/python-dcm
A high-performance Python package for handling ETAS DCM(Data Conversion Format) files used in engine calibration tools like INCA, MDA, EHANDBOOK, and CANape.
tophat-recondition
Post-processor for TopHat unmapped.bam files making them usable by downstream software.
argparse2tool
transparently build CWL and Galaxy XML tool definitions for any script that uses argparse
https://github.com/casperdcl/deploy-pypi
Securely build and upload Python distributions to PyPI
https://github.com/caleb531/imessage-conversation-analyzer
Gathers metrics of your choice for the entire history of a macOS Messages conversation
https://github.com/blue-yonder/devpi-builder
Automatically build and upload python packages to devpi
https://github.com/cetteup/aspxstats
Python library for retrieving stats of Battlefield 2 and Battlefield 2142 players
csaf-controls
Control Systems Analysis Framework - a framework to minimize the effort required to evaluate, implement, and verify controller design (classical and learning enabled) with respect to the system dynamics.
brightway2-data
Tools for the management of inventory databases and impact assessment methods. Part of the Brightway LCA framework.
https://github.com/deepset-ai/haystack-demos
Fully working applications that demonstrate how to use Haystack to implement various use cases
zookeeper
A small library for managing deep learning models, hyperparameters and datasets
CalibrationAnalysis
Multi-language suite for analyzing calibration of probabilistic predictive models.
https://github.com/nuccitheboss/cleantest
A testing framework that brings up clean environments and mini-clusters for developers in a hurry
equinox
Equinox is an open source platform that supports the holistic risk management of sustainable finance projects
https://github.com/asreview/asreview-covid19
Extension that adds Covid-19 related datasets to ASReview
https://github.com/google/tf-quant-finance
High-performance TensorFlow library for quantitative finance.
https://github.com/eonu/sequentia
Scikit-Learn compatible HMM and DTW based sequence machine learning algorithms in Python.
https://github.com/mattyowl/rssmospipeline
Pipeline for reducing both longslit and multi-object spectroscopic data from the Robert Stobie Spectrograph on SALT.
factor-analyzer
A Python module to perform exploratory & confirmatory factor analyses.
https://github.com/dyka3773/mvn-tree-visualizer
A simple command line tool to visualize the dependency tree of a Maven project as interactive HTML diagrams or structured JSON.
notebook-examples
Example notebooks showing how to work with ECMWF services and data
https://github.com/brianpugh/python-template
Python project and library template for clean, reliable, open-source projects.
https://github.com/cosmoglobe/cosmoglobe
The Cosmoglobe Sky model. A Python package for producing astrophysical sky simulations directly from Commander results.
https://github.com/cgohlke/geospatial-wheels
Geospatial library wheels for Python on Windows.
https://github.com/cakecrusher/mimicbot
Mimicbot enables the effortless yet modular creation of an AI chat bot model that imitates another person's manner of speech.
digipathai
Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay
https://github.com/andreartelt/ceml
CEML - Counterfactuals for Explaining Machine Learning models - A Python toolbox
openlca-python-examples
Explains the usage of the openLCA API from Python (Jython)
https://github.com/rohankishore/physipy
Python Library to calculate all types of Physics Formulae, both for calculations and research
https://github.com/barkure/juliabridge
一个用于与 Julia 进行通信的 Python 包。A Python package for communicating with Julia.
https://github.com/crowdstrike/misp-tools
Import CrowdStrike Threat Intelligence into your instance of MISP
ecosecrets
ecoSecrets is a web application which enables users to manage their camera traps data
diffractem
Pre-processing and data management for serial electron diffraction data.
openrouteservice
:snake: The Python API to consume openrouteservice(s) painlessly!
nat
Python module to use the annotations created with NeuroCurator, for example in a Jupyter notebook.
https://github.com/thebabylonai/babylog
A lightweight logger for machine learning teams to log images and predictions in production.
https://github.com/cdcgov/recordlinker
The RecordLinker is a service that links records from two datasets based on a set of common attributes. The service is designed to be used in a variety of public health contexts, such as linking patient records from different sources or linking records from different public health surveillance systems.
https://github.com/pyglimer/pyglimer
An automatic seismology toolset for global P-to-S and S-to-P receiver function imaging
isambard
Intelligent System for Analysis, Model Building And Rational Design of biomolecules.
crevasse_propagation
thermo-visco-elastic model for slow crevasse propagation adapted from Poinar et al., 2017
https://github.com/benjaminleroy/cowpatch
pythonic ggplot image combinations https://benjaminleroy.github.io/cowpatch
https://github.com/csinva/data-viz-utils
Functions for easily making publication-quality figures with matplotlib.
https://github.com/althonos/iocursor
A zero-copy file-like wrapper for Python byte buffers, inspired by Rust's std::io::Cursor.
https://github.com/bluebrain/neurocurator
Desktop application (GUI) to perform systematic and collaborative curation of neuroscientific literature.
https://github.com/dcavar/python-tutorial-notebooks
Python tutorials as Jupyter Notebooks for NLP, ML, AI
https://github.com/awslabs/keras-apache-mxnet
[DEPRECATED] Amazon Deep Learning's Keras with Apache MXNet support
https://github.com/drsoliddevil/mlr-gd
Multiple linear regression by gradient descent.
https://github.com/tesserato/envelope
Python module to extract the envelope of signals.
https://github.com/coqui-ai/coqpit
Simple but maybe too simple config management through python data classes. We use it for machine learning.
