bpmodels
[RETIRED. Use the epichains package instead]. Methods for simulating and analysing the sizes and lengths of chains from branching process models
https://github.com/royalhaskoningdhv/sam
Python package for time series analysis and machine learning
https://github.com/cdcgov/cdc-open-viz
CDC OpenViz is a library of React packages for data visualization.
https://github.com/bionomia/dwc_agent
Ruby gem to cleanse Darwin Core terms containing people names prior to passing to its dependent parser. Comes with a command-line utility.
phylobase
An R package that provides a base S4 class for comparative methods, incorporating one or more trees and trait data
https://github.com/climlab/climlab-rrtmg
A stand-along Python wrapper for the RRTMG radiation modules
https://github.com/alleninstitute/brain_observatory_utilities
A repository for analysis tools for data available from the AllenSDK
https://github.com/bioconductor/genomicfiles
Distributed computing by file or by range
https://github.com/alleninstitute/scrattch.vis
scRNA-seq data visualization from scrattch
BEMRosetta
Hydrodynamic coefficients viewer and converter for Boundary Element Method solver formats
https://github.com/bytehamster/bibtexdblpcomplete
This tool takes a bibtex file and tries to complete each entry using the dblp database.
https://github.com/alleninstitute/pygraphteasar
A library for running the TEASAR algorithm on spatial graphs embedded using scipy csgraph operations.
https://github.com/alan-turing-institute/summer-experience-challenges
For coordinating efforts and collecting material for student challenges at the Turing summer experience for 16-17 year olds.
https://github.com/cadet/cadet-python-tutorial
Interactive tutorials and documentation for file based Python interface.
https://github.com/adrn/delicatessen
The "plots" project at online.tess.science!
https://github.com/bluebrain/morphio
A python and C++ library for reading and writing neuronal morphologies
pandora
A stereo matching framework that will help you design your stereo matching pipeline with state of the art performances.
https://github.com/bytedance/particle-sfm
ParticleSfM: Exploiting Dense Point Trajectories for Localizing Moving Cameras in the Wild. ECCV 2022.
https://github.com/atmtools/arts-lectures
Provides a set of practical exercises using the radiative-transfer model ARTS
https://github.com/adaptivemotorcontrollab/cebra-demos
CEBRA Demo Notebooks. Please see all of them at the URL below:
mglasso
Inference of multiscale graphical models with neighborhood selection approach
desolver
A Python library for solving Initial Value Problems using various numerical integration methods.
icsc-paradigms-and-patterns
Slides and exercises for the iCSC lecture "Software Paradigms and Programming Patterns"
krippendorff
Fast computation of Krippendorff's alpha agreement measure in Python.
https://github.com/camel-lab/camel_tools
A suite of Arabic natural language processing tools developed by the CAMeL Lab at New York University Abu Dhabi.
cachevisualization
a nuget package that can be used in any .net web app to visualize http runtime cache
https://github.com/acdh-oeaw/vocabseditor
Vocabseditor is a web-based tool for collaborative work on controlled vocabularies development
https://github.com/crytic/medusa
Parallelized, coverage-guided, mutational Solidity smart contract fuzzing, powered by go-ethereum
metabolishmm
Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs
https://github.com/ai-forever/ocr-model
An easy-to-run OCR model pipeline based on CRNN and CTC loss
https://github.com/ai-forever/ru-clip
CLIP implementation for Russian language
https://github.com/dpvreony/nettestregimentation
Unit Test Regimentation for .NET
lineage
tools for genetic genealogy and the analysis of consumer DNA test results
https://github.com/aehrc/fhir-tx-transforms
Transformations of various code systems to FHIR.
https://github.com/alleninstitute/biophys_optimize
Optimization of single-cell biophysically detailed models
https://github.com/cgre-aachen/teaching-geomodeling
content for geomodeling class
tr1
Read Human Mortality Database and Human Fertility Database Data from the Web
https://github.com/bowang-lab/agile
AGILE Platform: A Deep Learning-Powered Approach to Accelerate LNP Development for mRNA Delivery
GWASTools
Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis
https://github.com/cda-tum/mqt-misim
MQT library to handle quantum circuits with mixed dimensions
https://github.com/adrn/pyia
a Python package for working with data from the Gaia mission
osembe_ecemf
This repository contains the scenarios modelled in OSeMBE throughout the H2020 project ECEMF -European Climate and Energy Modelling Forum.
https://github.com/awslabs/nx-plugin-for-aws
The @aws/nx-plugin is a collection of code generators that automate the creation and configuration of cloud-native applications using AWS, TypeScript, Python and React within the Nx development ecosystem.
https://github.com/cran-task-views/experimentaldesign
CRAN Task View: Design of Experiments (DoE) & Analysis of Experimental Data
https://github.com/csdms/bmi-example-python
An example of wrapping a model written in Python with a BMI
oneimpact
Tools for the assessment of the cumulative impacts of anthropogenic features in ecological studies
https://github.com/amazon-science/cocomic
CoCoMIC: Code Completion By Jointly Modeling In-file and Cross-file Context
https://github.com/node-red-contrib-themes/theme-collection
A collection of themes for Node-RED
lime
Local Interpretable Model-Agnostic Explanations (R port of original Python package)
catnet
🛰️ Learning to Aggregate Multi-Scale Context for Instance Segmentation in Remote Sensing Images (TNNLS 2024)
https://github.com/alleninstitute/cell_type_mapper
Repository for storing prototype functionality implementations for the BKP
https://github.com/bonsai-rx/harp
Bonsai Library containing interfaces for data acquisition and control of devices implementing the Harp protocol
https://github.com/compvis/fm-boosting
FMBoost: Boosting Latent Diffusion with Flow Matching (ECCV 2024 Oral)
https://github.com/biomedsciai/biomed-multi-omic
Build foundation model on RNA or DNA data
https://github.com/bluebrain/bbp-atlas-pipeline-validator
Validation of Atlas pipeline configuration
