https://github.com/coreylammie/tcas-stdp • Rank 3.3 • Science 36%

IEEE Transactions on Circuits and Systems I: Efficient FPGA Implementations of Pair and Triplet-based STDP for Neuromorphic Architectures

https://github.com/bluegreen-labs/r_project_template • Rank 3.3 • Science 36%

A BlueGreen Labs R project template to easily organize your research project

https://github.com/chains-project/gosurf • Rank 3.3 • Science 36%

Static analyzer to find locations to hide malicious code in Go

https://github.com/chains-project/bacardi • Rank 3.3 • Science 36%

fix breaking dependency updates 🛠️

https://github.com/bluebrain/emsim • Rank 3.3 • Science 36%

EMSim is a library that compute different electro-magnetic effects like LPF and VSD.

https://github.com/aphalo/gginnards • Rank 13.3 • Science 26%

R package extending 'ggplot2' with manipulation and debugging tools.

https://github.com/compwa/pycompwa • Rank 6.3 • Science 33%

[deprecated] Python interface of ComPWA

gfoRmula • Rank 16.3 • Science 23%

The gfoRmula package implements the parametric g-formula in R. The parametric g-formula (Robins, 1986) uses longitudinal data with time-varying treatments and confounders to estimate the risk or mean of an outcome under hypothetical treatment strategies specified by the user.

https://github.com/amazon-science/alexa-arena • Rank 6.3 • Science 33%

https://github.com/chiang-yuan/llamp • Rank 6.3 • Science 33%

A web app and Python API for multi-modal RAG framework to ground LLMs on high-fidelity materials informatics. An agentic materials scientist powered by @materialsproject, @langchain-ai, and @openai

imagequant • Rank 13.3 • Science 26%

Python bindings for libimagequant

episensr • Rank 3.3 • Science 36%

Basic sensitivity analysis of epidemiological results in R: Moved to codeberg.org/dhaine/episensr

fair-code • Rank 3.3 • Science 36%

A template to make your software more FAIR compliant

ComplexUpset • Rank 16.3 • Science 23%

A library for creating complex UpSet plots with ggplot2 geoms

negenes • Rank 6.2 • Science 33%

Estimating the number of essential genes in a genome on the basis of data from a random transposon mutagenesis experiment, through the use of a Gibbs sampler.

screed • Rank 16.2 • Science 23%

a simple read-only sequence database, designed for short reads

icellr • Rank 16.2 • Science 23%

Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptomics (ST)).

crypt4gh • Rank 13.2 • Science 26%

GA4GH cryptographic tools

mapme.biodiversity • Rank 13.2 • Science 26%

Efficient analysis of spatial biodiversity datasets for global portfolios

py-tree • Rank 13.2 • Science 26%

Package for generating and drawing (fractal)trees.

https://github.com/darothen/py-mie • Rank 6.2 • Science 33%

Python wrapper for Mie theory libraries used in aerosol radiative calculations

datacomparer • Rank 13.2 • Science 26%

dataCompareR is an R package that allows users to compare two datasets and view a report on the similarities and differences.

shiny.telemetry • Rank 13.2 • Science 26%

Easy logging of users activity and session events of your Shiny App

climatemodels.jl • Rank 6.2 • Science 33%

Julia interface to climate models + tracked workflow framework

https://github.com/biigle/laravel-file-cache • Rank 13.2 • Science 26%

Fetch and cache files from local filesystem, cloud storage or public webservers in Laravel or Lumen

GenomicInteractions • Rank 16.2 • Science 23%

R/Bioconductor package for handling Genomic interaction data, annotating genomic features with interaction information and producing summary plots / statistics

netCoin • Rank 13.2 • Science 26%

bkmr • Rank 16.2 • Science 23%

Bayesian kernel machine regression

dafi • Rank 6.2 • Science 33%

DAFI: Ensemble based data assimilation and field inversion, repository for internal development

composites • Rank 13.2 • Science 26%

Methods to calculate composite plate properties

https://github.com/biometris/statgensta • Rank 13.2 • Science 26%

See https://biometris.github.io/statgenSTA for a full description

eDisGo • Rank 13.2 • Science 26%

Optimization of flexibility options and grid expansion for distribution grids based on PyPSA

cpgames • Rank 13.2 • Science 26%

Games: Create interesting games in pure python.

PBSddesolve • Rank 13.2 • Science 26%

R package PBSddesolve - Solver for delay differential equations

https://github.com/dcavar/dcavar.github.io • Rank 3.2 • Science 36%

Cavar's homepage

https://github.com/antsx/antspyt1w • Rank 3.2 • Science 36%

https://github.com/chains-project/verifiable-client-diversity • Rank 3.2 • Science 36%

A few more cents per minority client

https://github.com/aehrc/svep • Rank 3.2 • Science 36%

https://github.com/festim-dev/foam2dolfinx • Rank 3.2 • Science 36%

A repository to handle the conversion of OpenFOAM data to dolfinx functions

https://github.com/dbraun/dac-jax • Rank 3.2 • Science 36%

JAX Implementations of Descript Audio Codec and EnCodec

https://github.com/alan-turing-institute/rctab-cli • Rank 3.2 • Science 36%

RCTab CLI

https://github.com/alleninstitute/deep-neurographs • Rank 3.2 • Science 36%

A Python package that corrects split mistakes in a fragmented neuron segmentation using a graph neural network.

https://github.com/aehrc/smart-forms-ig • Rank 3.2 • Science 36%

https://github.com/anenadic/research-sustainability-storyboard • Rank 3.2 • Science 36%

Research sustainability storyboard hackidea from CW20

https://github.com/alan-turing-institute/rctab-functions • Rank 3.2 • Science 36%

RCTab function apps to interact with Azure subscriptions.

https://github.com/chris-santiago/wetsuit • Rank 3.2 • Science 36%

A Scikit-learn style wrapper for H2O estimators.

https://github.com/chaoss/augur-license • Rank 3.2 • Science 36%

Augur's Open Source License coverage tool. Provides license identification by file, identification of non-OSI compliant licenses, and percentage of a project with license declarations. Also provides a downloadable SBOM with license information by file. Integrated with Augur, and leveraging Fossology scanners and DosocsV2.

https://github.com/alleninstitute/human_cross_areal • Rank 3.2 • Science 36%

Human cellular diversity across cortex

https://github.com/dmetivie/robustmeans.jl • Rank 3.2 • Science 36%

Implement some Robust Mean Estimators

https://github.com/broadinstitute/gnomad-deployments • Rank 3.2 • Science 36%

kustomizations for current gnomad project kubernetes deployments

https://github.com/acdh-oeaw/youbeon-frontend • Rank 3.2 • Science 36%

Young Believers Online (YouBeOn) frontend

https://github.com/alleninstitute/great_ape_mtg • Rank 3.2 • Science 36%

snRNA-seq of temporal cortex in great apes

https://github.com/amazon-science/wikiwiki-dataset • Rank 3.2 • Science 36%

sym • Rank 13.2 • Science 26%

Unified interface to symbolic manipulation libraries in Python

toastui • Rank 13.2 • Science 26%

R htmlwidgets for ToastUI libraries: grid, calendar, chart and editor

ntplib • Rank 26.2 • Science 13%

keeptrack.space • Rank 13.2 • Science 26%

🌎📡 TypeScript Astrodynamics Software for Non-Engineers. 3D Visualization of satellite data and the sensors that track them.

demography • Rank 16.2 • Science 23%

demography package for R

https://github.com/arviz-devs/arviz-base • Rank 13.2 • Science 26%

Base ArviZ features and converters

agave • Rank 13.2 • Science 26%

https://github.com/bentoml/comfy-pack • Rank 13.1 • Science 26%

A comprehensive toolkit for reliably locking, packing and deploying environments for ComfyUI workflows.

diyar • Rank 13.1 • Science 26%

https://github.com/bchao1/fun-with-mnist • Rank 3.1 • Science 36%

Playing with MNIST. Machine Learning. Generative Models.

https://github.com/helske/rlibeemd • Rank 16.1 • Science 23%

Ensemble Empirical Mode Decomposition (EEMD) and Its Complete Variant (CEEMDAN)

https://github.com/batoolmm/deploy-multi-lang-tw • Rank 6.1 • Science 33%

Hyperopt • Rank 11.1 • Science 28%

Hyperparameter optimization in Julia.

https://github.com/batoolmm/arabic-tw-test • Rank 6.1 • Science 33%

partitionedparallelsampling.jl • Rank 1.1 • Science 38%

Parallel sampling via space partitioning

tree-influence • Rank 8.1 • Science 31%

Influence Estimation for Gradient-Boosted Decision Trees

https://github.com/chaoss/grimoirelab-cereslib • Rank 13.1 • Science 26%

This project aims at unifying, eventizing and enriching information from the Perceval tool

https://github.com/climateimpactlab/labor-code-release-2020 • Rank 3.1 • Science 36%

https://github.com/aryashah2k/3dnnvisualizer • Rank 3.1 • Science 36%

3D Neural Network visualizer for YOLO v2 - tiny, AlexNet, LeNet built with Javascript, Tensorflow JS, Keras and TensorSpace JS.

https://github.com/apertium/apertium-apy • Rank 13.1 • Science 26%

📦 Apertium HTTP Server in Python

repr • Rank 26.1 • Science 13%

String and byte representations for all kinds of R objects

exotic • Rank 16.1 • Science 23%

EXOplanet Transit Interpretation Code

https://github.com/ami-iit/rod • Rank 13.1 • Science 26%

The ultimate Python tool for RObot Descriptions processing.

snakemake • Rank 29.1 • Science 10%

This is the development home of the workflow management system Snakemake. For general information, see

ecoscope • Rank 13.1 • Science 26%

Conservation data analytics

OpenDER • Rank 13.1 • Science 26%

Open-source Distributed Energy Resources (DER) Model that represents IEEE Standard 1547-2018 requirements for steady-state and dynamic analyses

pmapper • Rank 13.1 • Science 26%

3D pharmacophore signatures and fingerprints

stevedore • Rank 16.1 • Science 23%

:cloud::rowboat::whale::cloud: Docker client for R

mark • Rank 13.1 • Science 26%

R package with a set of general use functions for easier working

https://github.com/cqcl/pytket-qir • Rank 13.1 • Science 26%

Public repo for the pytket-qir package

rmgarch • Rank 13.1 • Science 26%

Multivariate GARCH Models

r2glmm • Rank 13.1 • Science 26%

An R package for computation of model R squared and semi-partial R squared (with confidence limits) in linear and generalized linear mixed models

https://github.com/cylc/cylc-uiserver • Rank 13.0 • Science 26%

A Jupyter Server extension that serves the cylc-ui web application for monitoring and controlling Cylc workflows.

popper • Rank 16.0 • Science 23%

Container-native task automation engine.

https://github.com/biometris/statgenhtp • Rank 13.0 • Science 26%

See https://biometris.github.io/statgenHTP for a full description

https://github.com/cytoscape/network-ptm-integration • Rank 3.0 • Science 36%

This repo tracks the work of data-driven addition of phosphorylation sites to proteins in networks (and pathways).

https://github.com/bowang-lab/ctrl-dna • Rank 3.0 • Science 36%

Ctrl-DNA: Controllable Cell-Type-Specific Regulatory DNA Design via Constrained RL

https://github.com/broadinstitute/luad-cell-painting • Rank 3.0 • Science 36%

Repository for analysis of CellPainting data in the LUAD dataset

skip-thoughts • Rank 6.0 • Science 33%

Installable package for skip_thoughts forked from Tensorflow/research

e-manifest • Rank 13.0 • Science 26%

API services documentation and reference material for the e-Manifest hazardous waste tracking system

scDD • Rank 16.0 • Science 23%

R package to identify genes with differential distributions in single-cell RNA-seq

changepoint • Rank 16.0 • Science 23%

A toolkit for Bayesian change point detection

pyecharts • Rank 26.0 • Science 13%

🎨 Python Echarts Plotting Library

hextof-processor • Rank 6.0 • Science 33%

Code for preprocessing data from the HEXTOF instrument at FLASH, DESY in Hamburg (DE)

phyloregion • Rank 16.0 • Science 23%

Biogeographic regionalization and spatial conservation

geoarrow • Rank 13.0 • Science 26%

Extension types for geospatial data for use with 'Arrow'

https://github.com/impresscms/composer-addon-installer-plugin • Rank 13.0 • Science 26%

A plugin for @composer to allow the installation of @ImpressCMS modules, themes and translations