SeisModels.jl
SeisModels.jl: A Julia package for models of the Earth's interior - Published in JOSS (2020)
POSEIDON
POSEIDON: A Multidimensional Atmospheric Retrieval Code for Exoplanet Spectra - Published in JOSS (2023)
pycoxmunk
pycoxmunk: A python package for computing sea surface reflectance - Published in JOSS (2023)
pygwb
pygwb: a Python-based library for gravitational-wave background searches - Published in JOSS (2024)
EDO.js
EDO.js: A comprehensive JavaScript library for interaction with musical set theory in any tuning - Published in JOSS (2021)
Eaglescope
Eaglescope: an interactive visualization and cohort selection tool for biomedical data exploration. - Published in JOSS (2024)
dlmmc
dlmmc: Dynamical linear model regression for atmospheric time-series analysis - Published in JOSS (2019)
OT_Analysis
OT_Analysis: a software for rich analysis of force curves when probing living cells with optical tweezers - Published in JOSS (2023)
UnlockNN
UnlockNN: Uncertainty quantification for neural network models of chemical systems - Published in JOSS (2022)
iTensor
iTensor: An R package for independent component analysis-based matrix/tensor decomposition - Published in JOSS (2023)
seismolab
seismolab: A Python package for analyzing space-based observations of variable stars - Published in JOSS (2024)
udpPacketManager
udpPacketManager: An International LOFAR Station Data (Pre-)Processor - Published in JOSS (2024)
Ensight4Matlab
Ensight4Matlab: read, process, and write files in EnSight® Gold format from C++ or MATLAB® - Published in JOSS (2017)
Prism
Prism: Multiple spline regression with regularization, dimensionality reduction, and feature selection - Published in JOSS (2016)
ambrosia
ambrosia: An R package for calculating and analyzing food demand that is responsive to changing incomes and prices - Published in JOSS (2021)
amisrsynthdata
amisrsynthdata: A Python package for generating synthetic data for the Advanced Modular Incoherent Scatter Radars - Published in JOSS (2024)
fieldcompare
fieldcompare: A Python package for regression testing simulation results - Published in JOSS (2023)
Panako
Panako: a scalable audio search system - Published in JOSS (2022)
pvpumpingsystem
pvpumpingsystem: A Python package for modeling and sizing photovoltaic water pumping systems - Published in JOSS (2020)
Aronnax
Aronnax: An idealised isopycnal ocean model - Published in JOSS (2018)
G2Aero
G2Aero: A Python package for separable shape tensors - Published in JOSS (2023)
Systems Neuro Browser (SNUB)
Systems Neuro Browser (SNUB) - Published in JOSS (2024)
singcar
singcar: Comparing single cases to small samples in R - Published in JOSS (2021)
h5preserve
h5preserve: Thin wrapper around h5py, inspired by camel - Published in JOSS (2018)
DataDepsGenerators.jl
DataDepsGenerators.jl: making reusing data easy by automatically generating DataDeps.jl registration code - Published in JOSS (2018)
SOUPy
SOUPy: Stochastic PDE-constrained optimization under high-dimensional uncertainty in Python - Published in JOSS (2024)
HostPhot
HostPhot: global and local photometry of galaxies hosting supernovae or other transients - Published in JOSS (2022)
MolPainter
MolPainter: A Tool for Painting and Solvating Layered Molecular Systems - Published in JOSS (2023)
Chitin Builder
Chitin Builder: a VMD tool for the generation of structures of chitin molecular crystals for atomistic simulations - Published in JOSS (2024)
REGENS
REGENS: an open source Python package for simulating realistic autosomal genotypes - Published in JOSS (2021)
registr 2.0
registr 2.0: Incomplete Curve Registration for Exponential Family Functional Data - Published in JOSS (2021)
TelescopeML -- I. An End-to-End Python Package for Interpreting Telescope Datasets through Training Machine Learning Models, Generating Statistical Reports, and Visualizing Results
TelescopeML -- I. An End-to-End Python Package for Interpreting Telescope Datasets through Training Machine Learning Models, Generating Statistical Reports, and Visualizing Results - Published in JOSS (2024)
sknet
sknet: A Python framework for Machine Learning in Complex Networks - Published in JOSS (2021)
Imbalance
Imbalance: A comprehensive multi-interface Julia toolbox to address class imbalance - Published in JOSS (2024)
MDEntropy
MDEntropy: Information-Theoretic Analyses for Molecular Dynamics - Published in JOSS (2017)
pylattica
pylattica: a package for prototyping lattice models in chemistry and materials science - Published in JOSS (2024)
`nrCascadeSim` - A simulation tool for nuclear recoil cascades resulting from neutron capture
`nrCascadeSim` - A simulation tool for nuclear recoil cascades resulting from neutron capture - Published in JOSS (2022)
TSInterpret
TSInterpret: A Python Package for the Interpretability of Time Series Classification - Published in JOSS (2023)
PhotonWeave
PhotonWeave - Published in JOSS (2025)
Samewords
Samewords: Automatic word disambigation in critical text editions - Published in JOSS (2019)
PERFORM
PERFORM: A Python package for developing reduced-order models for reacting fluid flows - Published in JOSS (2022)
h3ppy
h3ppy: An open-source Python package for modelling and fitting H$_3^+$ spectra - Published in JOSS (2025)
BioGears
BioGears: A C++ library for whole body physiology simulations - Published in JOSS (2020)
hsi-wizard: A magical open-source Python package for medical hyperspectral imaging applications
hsi-wizard: A magical open-source Python package for medical hyperspectral imaging applications - Published in JOSS (2025)
datafold
datafold: data-driven models for point clouds and time series on manifolds - Published in JOSS (2020)
Dune-MMesh
Dune-MMesh: The Dune Grid Module for Moving Interfaces - Published in JOSS (2022)
CoreBreakout
CoreBreakout: Subsurface Core Images to Depth-Registered Datasets - Published in JOSS (2020)
The country converter coco - a Python package for converting country names between different classification schemes
The country converter coco - a Python package for converting country names between different classification schemes - Published in JOSS (2017)
shoredate
shoredate: An R package for shoreline dating coastal Stone Age sites - Published in JOSS (2023)
jtools
jtools: Analysis and Presentation of Social Scientific Data - Published in JOSS (2024)
MiSTree
MiSTree: a Python package for constructing and analysing Minimum Spanning Trees - Published in JOSS (2019)
hivemind
Decentralized deep learning in PyTorch. Built to train models on thousands of volunteers across the world.
MatSurv
MatSurv: Survival analysis and visualization in MATLAB - Published in JOSS (2020)
RMAVIS v1.0
RMAVIS v1.0: a Shiny application for the analysis of vegetation survey data and assignment to GB NVC communities - Published in JOSS (2024)
proteusPy
proteusPy: A Python Package for Protein Structure and Disulfide Bond Modeling and Analysis - Published in JOSS (2024)
MODE.behave
MODE.behave: A Python Package for Discrete Choice Modeling - Published in JOSS (2023)
Distributions
A Julia package for probability distributions and associated functions.
LinkingLines
LinkingLines: Using the Hough Transform to Cluster Line Segments and Mesoscale Feature Extraction - Published in JOSS (2024)
kima
kima: Exoplanet detection in radial velocities - Published in JOSS (2018)
LocalCop
LocalCop: An R package for local likelihood inference for conditional copulas - Published in JOSS (2024)
Visualizing alpha-helical peptides in R with helixvis
Visualizing alpha-helical peptides in R with helixvis - Published in JOSS (2018)
Leafmap
Leafmap: A Python package for interactive mapping and geospatial analysis with minimal coding in a Jupyter environment - Published in JOSS (2021)
ctbench - compile-time benchmarking and analysis
ctbench - compile-time benchmarking and analysis - Published in JOSS (2023)
TraViA
TraViA: a Traffic data Visualization and Annotation tool in Python - Published in JOSS (2021)
LDDS
LDDS: Python package for computing and visualizing Lagrangian Descriptors for Dynamical Systems - Published in JOSS (2021)
SIHR
SIHR: a MATLAB/GNU Octave toolbox for single image highlight removal - Published in JOSS (2020)
GrIML
GrIML: A Python package for investigating Greenland's ice-marginal lakes under a changing climate - Published in JOSS (2025)
tehtuner
tehtuner: An R package to fit and tune models for the conditional average treatment effect - Published in JOSS (2023)
PhyloX
PhyloX: A Python package for complete phylogenetic network workflows - Published in JOSS (2024)
LibSWIFFT - A fast C/C++ Library for the SWIFFT Secure Homomorphic Hash Function
LibSWIFFT - A fast C/C++ Library for the SWIFFT Secure Homomorphic Hash Function - Published in JOSS (2021)
The Glasgow Fortran Source-to-Source Compiler
The Glasgow Fortran Source-to-Source Compiler - Published in JOSS (2018)
sam2lca
sam2lca: Lowest Common Ancestor for SAM/BAM/CRAM alignment files - Published in JOSS (2022)
spatPomp
spatPomp: An R package for spatiotemporal partially observed Markov process models - Published in JOSS (2024)
baseflow
baseflow: a MATLAB and GNU Octave package for baseflow recession analysis - Published in JOSS (2023)
HealpixMPI.jl
HealpixMPI.jl: an MPI-parallel implementation of the Healpix tessellation scheme in Julia - Published in JOSS (2024)
MLMOD
MLMOD: Machine Learning Methods for Data-Driven Modeling in LAMMPS - Published in JOSS (2023)
NEoST
NEoST: A Python package for nested sampling of the neutron star equation of state - Published in JOSS (2025)
shinyssdtools
shinyssdtools: A web application for fitting Species Sensitivity Distributions (SSDs) - Published in JOSS (2021)
BTE
BTE: a Python module for pandemic-scale mutation-annotated phylogenetic trees - Published in JOSS (2022)
MSMetaEnhancer
MSMetaEnhancer: A Python package for mass spectra metadata annotation - Published in JOSS (2022)
Mat-dp
Mat-dp: An open-source Python model for analysing material demand projections and their environmental implications, which result from building low-carbon systems. - Published in JOSS (2022)
pandas
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
phylosmith
phylosmith: an R-package for reproducible and efficient microbiome analysis with phyloseq-objects - Published in JOSS (2019)
riskclustr
riskclustr: Functions to Study Etiologic Heterogeneity - Published in JOSS (2019)
compboost
compboost: Modular Framework for Component-Wise Boosting - Published in JOSS (2018)
DataScribe
DataScribe: An Omeka S module for structured data transcription - Published in JOSS (2024)
UTDEventData
UTDEventData: An R package to access political event data - Published in JOSS (2019)
BayesEoR
BayesEoR: Bayesian 21-cm Power Spectrum Estimation from Interferometric Visibilities - Published in JOSS (2024)
pyEQUIB Python Package, an addendum to proEQUIB
pyEQUIB Python Package, an addendum to proEQUIB: IDL Library for Plasma Diagnostics and Abundance Analysis - Published in JOSS (2020)
Varistran
Varistran: Anscombe's variance stabilizing transformation for RNA-seq gene expression data - Published in JOSS (2017)
The MFrontGenericInterfaceSupport project
The MFrontGenericInterfaceSupport project - Published in JOSS (2020)
GeoHexViz
GeoHexViz: A Python package for the visualizing hexagonally binned geospatial data - Published in JOSS (2023)