py3-unicodecsv
Python2's stdlib csv module is nice, but it doesn't support unicode. This module is a drop-in replacement which *does*. If you prefer python 3's semantics but need support in py2, you probably want https://github.com/ryanhiebert/backports.csv
https://github.com/aiidateam/aiida-optimade
OPTIMADE RESTful API implementation for AiiDA
https://github.com/comunica/comunica-feature-reasoning
📬 Comunica packages for reasoning during query execution
gridsampler
A simulation tool to determine the required sample size for repertory grid studies
https://github.com/cbg-ethz/viloca
VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data
https://github.com/bioconductor/biobase
Biobase: Base functions for Bioconductor
https://github.com/artivis/kalmanif
A small collection of Kalman Filters on Lie groups
deepgmm
This package is provides a mixture model based approach for deep learning.
RBIEN
Tools for accessing the Botanical Information and Ecology Network (BIEN) database
https://github.com/usnistgov/pyprism
A framework for conducting polymer reference interaction site model (PRISM) calculations
casa0005repo
Bookdown :book: for CASA0005 practicals: https://andrewmaclachlan.github.io/CASA0005repo/
https://github.com/aspuru-guzik-group/gp_redox_rxn
Code repo for redox potentials with GPs
https://github.com/astrazeneca/cellatria
An Agentic AI Framework for Ingestion and Standardization of Single-Cell RNA-seq Data Analysis
https://github.com/curent/ece522
Hands-on Project for Power System Analysis II (UTK ECE 522)
https://github.com/alleninstitute/asap-modules
Shared repo for EM connectomics and Array Tomography render based image processing modules
https://github.com/geoscienceaustralia/ga-aem
Modelling and Inversion of Airborne Electromagnetic (AEM) Data in 1D
colormap
Utilities to visualise and create matplotlib colormaps and various color codecs
swolfpy
SwolfPy is a free, multi-platform, Python-based, open-source, SWM LCA optimization framework with built-in parametric and Monte Carlo sensitivity and uncertainty analysis capabilities.
canvasXpress
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
ModifiedHankelFunctionsOfOrderOneThird
Solutions to Stokes' differential equation.
https://github.com/bluebrain/atlas-densities
Tools to compute densities in the context of brain atlases.
climate-change-data
:earth_africa: A curated list of APIs, open data and ML/AI projects on climate change
pypsa-gb
PyPSA-GB: An open source model of the GB transmission network for simulating future energy scenarios
https://github.com/google-deepmind/jeo
Jeo: Jax model training lib for Earth Observation
ROCR
An R package for visualizing classifier performance (Sing/Sander/Beerenwinkel/Lengauer [2005] Bioinformatics)
https://github.com/bowang-lab/bioreason
BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model
https://github.com/catalyst-cooperative/rmi-ferc1-eia
A collaboration with RMI to integrate FERC Form 1 and EIA CapEx and OpEx reporting
pynonpar
Package providing functions to calculate pseudo-ranks and (pseudo)-rank based nonparametric test statistics.
https://github.com/ag2ai/fastagency
The fastest way to bring multi-agent workflows to production.
https://github.com/alleninstitute/mouse_connectivity_models
Python package providing mesoscale connectivity models for mouse.
https://github.com/awslabs/aws-codeseeder
The aws-codeseeder project enables builders to easily "seed" python code to AWS CodeBuild for remote execution in their cloud environments.
https://github.com/chrisgrieser/nvim-puppeteer
Automatically convert strings to f-strings or template strings and back.
JointAI
Joint Analysis and Imputation of generalized linear models and linear mixed models with missing values
PyPRECIS
PyPRECIS is the python based training environment for Met Office PRECIS training courses.
https://github.com/alleninstitute/swdb_2017_tools
A collaborative Python package built by participants of the Summer Workshop on the Dynamic Brain
https://github.com/broadinstitute/thurloe
A simple service to store arbitrary key/value pairs
https://github.com/coinfabrik/scout-soroban
Scout is an extensible open-source tool intended to assist Stellar Soroban smart contract developers and auditors detect common security issues and deviations from best practices.
https://github.com/andrewtavis/causeinfer
Machine learning based causal inference/uplift in Python
https://github.com/astropy/coordinates-benchmark
Accuracy Benchmarks of different coordinate conversion codes. Maintainers: @astrojuanlu, @astrofrog, and @cdeil
wqbench
R package to generate download and compile data from EPA ECOTOX database
https://github.com/aclai-lab/soleposthoc.jl
Sole (SymbOlic LEarning) Post Hoc Analysis Module
ABSESpy
ABSESpy: An agent-based modeling framework for social-ecological systems - Published in JOSS (2024)
https://github.com/singroup/dscribe
DScribe is a python package for creating machine learning descriptors for atomistic systems.
medmodels
MedModels is a high-speed RWE framework to apply the latest methods from scientific research to medical data.
https://github.com/cbeuw/cloak
A censorship circumvention tool to evade detection by authoritarian state adversaries
https://github.com/bigscience-workshop/petals
🌸 Run LLMs at home, BitTorrent-style. Fine-tuning and inference up to 10x faster than offloading
R2ucare
R package to perform goodness-of-fit tests for capture-recapture models (and various manipulations)
https://github.com/dpvreony/vetuviem
Vetuvium is a code generation toolkit to support ReactiveUI View to View Model binding (MVVM -> V2VM -> Ve-Tu-Viem)
https://github.com/carv-ics-forth/tebis
An efficient distributed key value store for fast storage devices and RDMA networks
https://github.com/biocypher/biochatter-light
The light frontend for BioChatter, in pure Python
ponchon-savarit-for-gnu-octave
A toolbox for the Ponchón-Savarit method for GNU Octave