https://github.com/bisaloo/mcmcensemble
R Package Providing Ensemble Sampler for Affine-Invariant MCMC
https://github.com/alexander-pastukhov/tridim-regression
Package to calculate the bi/tri-dimensional regression between two 2D/3D configurations.
DiscoRhythm
An R Package for Discovering Rhythmicity in Biological Data with an Interactive Web Interface
https://github.com/bpbond/cpcrw_incubation
PNNL TES incubation of CPCRW soil cores #openexperiment
https://github.com/allisonhorst/esm-244-2019
ESM 244 Course Materials Winter 2019
GLOCOFFS
GLObal Coastal Ocean Flood Forecasting System: An ADCIRC-based global storm tide modeling system providing real-time forecasts of coastal flooding
https://github.com/astropenguin/aixiv
AI-powered arXiv translation and summarization
https://github.com/alan-turing-institute/grace
Graph Representation Analysis for Connected Embeddings
https://github.com/madsjulia/biguq.jl
Bayesian Information Gap Decision Theory
https://github.com/brentp/peddy
genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF
plotKML
plotKML: Visualization of Spatial and Spatio-Temporal Objects in Google Earth
https://github.com/alleninstitute/skeleton_keys
Analysis of neuron morphology skeletons
https://github.com/cbg-ethz/treemhn
Joint inference of exclusivity patterns and recurrent trajectories from tumor mutation trees
https://github.com/kundajelab/mpra-dragonn
Code accompanying the paper "Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively parallel reporter assays"
https://github.com/alan-turing-institute/spc-hpc-pipeline
Azure batch pipeline for the SPC project
https://github.com/amueller/structured-prediction-workshop
Introduction to structured prediction with Python and pystruct
strainchoosr
:palm_tree: Choose the most diverse possible set of strains from a phylogenetic tree
https://github.com/dru-mara/evalne-gui
EvalNE-GUI: The Graphical User Interface for EvalNE
https://github.com/broadinstitute/tgg-viewer
A free, open-source web app for visualizing splice junctions, expression, and other sequencing data genome-wide using IGV.js
https://github.com/imperialcollegelondon/pip-tools-template
Template for a pip-tools-based python project without docs and license information
https://github.com/clariah/wp4-datalegend-api
CLARIAH Structured Data Hub API (formerly QBer backend))
https://github.com/cornerstonejs/cornerstone-nifti-image-loader
[Deprecated] Use Cornerstone3D Instead https://cornerstonejs.org/
AGHmatrix
An R package to compute relationship matrices for diploid and autopolyploid species
https://github.com/azavea/django-ecsmanage
Run any Django management command on an AWS Elastic Container Service (ECS) cluster.
https://github.com/amueller/advanced-sklearn-boston-nlp-2016
Material and slides for Boston NLP meetup May 23rd 2016
https://github.com/cda-tum/mqt-dasqa
MQT DASQA - Designer for Superconducting Quantum Architectures
https://github.com/adam-kerrigan/pybader
Threaded implementation of grid-based Bader charge analysis.
https://github.com/ami-iit/paper_romualdi_viceconte_2024_humanoids_dnn-mpc-walking
Code associated to Humanoids 2024 paper submission
https://github.com/astorfi/llm-alignment-project
A comprehensive template for aligning large language models (LLMs) using Reinforcement Learning from Human Feedback (RLHF), transfer learning, and more. Build your own customizable LLM alignment solution with ease.
https://github.com/broadinstitute/keras-resnet
Keras package for deep residual networks
https://github.com/castelao/supportdata
Download support data for Python packages, like sample data for tests and binary databases.
https://github.com/alleninstitute/visual_behavior_glm_mfish
GLM for ophys df/f during visual behavior
quantregForest
R package - Quantile Regression Forests, a tree-based ensemble method for estimation of conditional quantiles (Meinshausen, 2006).
https://github.com/whylabs/whylogs
An open-source data logging library for machine learning models and data pipelines. 📚 Provides visibility into data quality & model performance over time. 🛡️ Supports privacy-preserving data collection, ensuring safety & robustness. 📈
https://github.com/crsh/psych-transparency-guide
Supplementary material for "A practical guide for transparency in psychological science" (find the paper at https://psyarxiv.com/rtygm/)
https://github.com/beegass/cs-541-deep-learning
CS-541 Deep Learning is a graduate class that teaches both a theoretical and practical approach to deep learning. You will be able to see this in the different homework files in the form of workable code that can be tested as well as proofs and explanations as to where the code is coming from.
pynotes-agriscience
A set of hands-on coding exercises to solve common tasks and simple problems in agricultural sciences.
https://github.com/allisonhorst/esm-206-labs-2019
Compiled lab materials for ESM 206 (Fall 2019)
https://github.com/astorfi/attention-guided-sparsity
Attention-Based Guided Structured Sparsity of Deep Neural Networks
https://github.com/alan-turing-institute/cage-challenge-1-public
Team Mindrake's hierarchical RL solution to the first CybORG CAGE challenge.
https://github.com/digital-chemistry-laboratory/libconeangle
Library for calculating exact ligand cone angles
https://github.com/amueller/strata-nyc-2016
Materials fort Strata NYC 2016 scikit-learn tutorial
https://github.com/blutjens/awesome-earth-system-ml
🌎 A curated list of Earth system datasets for the machine learning and weather, climate, ice, ocean, etc. community.
https://github.com/alan-turing-institute/stat-fem
Python tools for solving data-constrained finite element problems
https://github.com/go-telegram-bot-api/telegram-bot-api
Golang bindings for the Telegram Bot API
https://github.com/cboettig/pdg_control
:notebook: Pretty Darn Good Control: applications in optimal control
https://github.com/carlos-alberto-silva/helios
HELIOS - the Heidelberg LiDAR Operations Simulator - is a software package for interactive real-time simulation and visualisation of terrestrial, mobile and airborne laser scan surveys written in Java.
https://github.com/aaronpeikert/repro-talk
These Slides are for a medium length talk (30min) meant as an introduction to a reproducible research workflow.
https://github.com/alan-turing-institute/alexa-room-finder
Lets you find meeting rooms through our Amazon Echo
https://github.com/apertium/apertium-fin-est
Apertium translation pair for Finnish and Estonian
https://github.com/cran-task-views/dynamicvisualizations
CRAN Task View: Dynamic Visualizations and Interactive Graphics
imsig
Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
rngtools
R package - Utility functions for working with Random Number Generators
https://github.com/avik-pal/deeplearningbenchmarks
Benchmarks across Deep Learning Frameworks in Julia and Python
https://github.com/avik-pal/cs335-compiler
CS335 Compilers IITK Course Project