REvoSim v3
REvoSim v3: A fast evolutionary simulation tool with ecological processes - Published in JOSS (2023)
smot
smot: a python package and CLI tool for contextual phylogenetic subsampling - Published in JOSS (2022)
rgfrosh
rgfrosh: A Python package for calculating shock conditions using real gas equations of state - Published in JOSS (2024)
Noisyopt
Noisyopt: A Python library for optimizing noisy functions. - Published in JOSS (2017)
StormR
StormR: An R package to quantify and map the tropical storms and cyclones’ winds characteristics - Published in JOSS (2024)
TX$^2$
TX$^2$: Transformer eXplainability and eXploration - Published in JOSS (2021)
NLSE
NLSE: A Python package to solve the nonlinear Schrödinger equation - Published in JOSS (2024)
popeye
popeye: a population receptive field estimation tool - Published in JOSS (2016)
fABBA
fABBA: A Python library for the fast symbolic approximation of time series - Published in JOSS (2024)
Raphtory
Raphtory: The temporal graph engine for Rust and Python - Published in JOSS (2024)
EnergyModelsX
EnergyModelsX: Flexible Energy Systems Modelling with Multiple Dispatch - Published in JOSS (2024)
itmlogic
itmlogic: The Irregular Terrain Model by Longley and Rice - Published in JOSS (2020)
RayFlare
RayFlare: flexible optical modelling of solar cells - Published in JOSS (2021)
Omnizart
Omnizart: A General Toolbox for Automatic Music Transcription - Published in JOSS (2021)
PyLops-MPI - MPI Powered PyLops with mpi4py
PyLops-MPI - MPI Powered PyLops with mpi4py - Published in JOSS (2025)
PolarToolkit
PolarToolkit: Python Tools for Convenient, Reproducible, and Open Polar Science - Published in JOSS (2024)
WearableHRV
WearableHRV: A Python package for the validation of heart rate and heart rate variability in wearables - Published in JOSS (2024)
floodlight - A high-level, data-driven sports analytics framework
floodlight - A high-level, data-driven sports analytics framework - Published in JOSS (2022)
Sarracen
Sarracen: a Python package for analysis and visualization of smoothed particle hydrodynamics data - Published in JOSS (2023)
proteoDA
proteoDA: a package for quantitative proteomics - Published in JOSS (2023)
OpenMSIStream
OpenMSIStream: A Python package for facilitating integration of streaming data in diverse laboratory environments - Published in JOSS (2023)
OpenCCM
OpenCCM: An Open-Source Continuous Compartmental Modelling Package - Published in JOSS (2024)
SounderPy
SounderPy: An atmospheric sounding visualization and analysis tool for Python - Published in JOSS (2025)
s(ound)lab
s(ound)lab: An easy to learn Python package for designing and running psychoacoustic experiments. - Published in JOSS (2021)
PyDGN
PyDGN: a Python Library for Flexible and Reproducible Research on Deep Learning for Graphs - Published in JOSS (2023)
A MATLAB-based Instrument Control (MIC) package for fluorescence imaging
A MATLAB-based Instrument Control (MIC) package for fluorescence imaging - Published in JOSS (2025)
parafields
parafields: A generator for distributed, stationary Gaussian processes - Published in JOSS (2023)
Launcher
Launcher: A simple tool for executing high throughput computing workloads - Published in JOSS (2017)
Bitstream -- Binary Data for Humans
Bitstream -- Binary Data for Humans - Published in JOSS (2018)
hdlib
hdlib: A Python library for designing Vector-Symbolic Architectures - Published in JOSS (2023)
spiketools
spiketools: a Python package for analyzing single-unit neural activity - Published in JOSS (2023)
LEGWORK
LEGWORK: A python package for computing the evolution and detectability of stellar-origin gravitational-wave sources with space-based detectors - Published in JOSS (2022)
FAT Forensics
FAT Forensics: A Python Toolbox for Implementing and Deploying Fairness, Accountability and Transparency Algorithms in Predictive Systems - Published in JOSS (2020)
AmpTorch
AmpTorch: A Python package for scalable fingerprint-based neural network training on multi-element systems with integrated uncertainty quantification - Published in JOSS (2023)
PiSCAT
PiSCAT: A Python Package for Interferometric Scattering Microscopy - Published in JOSS (2022)
QAOA.jl
QAOA.jl: Toolkit for the Quantum and Mean-Field Approximate Optimization Algorithms - Published in JOSS (2023)
MOLE
MOLE: Mimetic Operators Library Enhanced - Published in JOSS (2024)
PyCHAM
PyCHAM: CHemistry with Aerosol Microphysics in Python - Published in JOSS (2020)
flux-data-qaqc
flux-data-qaqc: A Python Package for Energy Balance Closure and Post-Processing of Eddy Flux Data - Published in JOSS (2021)
RustBCA
RustBCA: A High-Performance Binary-Collision-Approximation Code for Ion-Material Interactions - Published in JOSS (2021)
SeqMetrics
SeqMetrics: a unified library for performance metrics calculation in Python - Published in JOSS (2024)
PyForestScan
PyForestScan: A Python library for calculating forest structural metrics from lidar point cloud data - Published in JOSS (2025)
Kepler Mapper
Kepler Mapper: A flexible Python implementation of the Mapper algorithm. - Published in JOSS (2019)
Bedparse
Bedparse: feature extraction from BED files - Published in JOSS (2019)
lavaanExtra
lavaanExtra: Convenience Functions for Package lavaan - Published in JOSS (2023)
Hasasia
Hasasia: A Python package for Pulsar Timing Array Sensitivity Curves - Published in JOSS (2019)
EUKulele
EUKulele: Taxonomic annotation of the unsung eukaryotic microbes - Published in JOSS (2021)
Gauss-Radau Small-body Simulator (GRSS)
Gauss-Radau Small-body Simulator (GRSS): An Open-Source Library for Planetary Defense - Published in JOSS (2025)
ASCENDS
ASCENDS: Advanced data SCiENce toolkit for Non-Data Scientists - Published in JOSS (2020)
cppdlr
cppdlr: Imaginary time calculations using the discrete Lehmann representation - Published in JOSS (2024)
chemotools
chemotools: A Python Package that Integrates Chemometrics and scikit-learn - Published in JOSS (2024)
approxposterior
approxposterior: Approximate Posterior Distributions in Python - Published in JOSS (2018)
APECSS
APECSS: A software library for cavitation bubble dynamics and acoustic emissions - Published in JOSS (2023)
LyceanEM
LyceanEM: A python package for virtual prototyping of antenna arrays, time and frequency domain channel modelling - Published in JOSS (2023)
QDistRnd
QDistRnd: A GAP package for computing the distance of quantum error-correcting codes - Published in JOSS (2022)
UQit
UQit: A Python package for uncertainty quantification (UQ) in computational fluid dynamics (CFD) - Published in JOSS (2021)
tidylda
tidylda: An R Package for Latent Dirichlet Allocation Using 'tidyverse' Conventions - Published in JOSS (2024)
PyroRL
PyroRL: A Reinforcement Learning Environment for Wildfire Evacuation - Published in JOSS (2024)
popsynth
popsynth: A generic astrophysical population synthesis framework - Published in JOSS (2021)
GridapSolvers.jl
GridapSolvers.jl: Scalable multiphysics finite element solvers in Julia - Published in JOSS (2024)
ObsPlus
ObsPlus: A Pandas-centric ObsPy expansion pack - Published in JOSS (2021)
xtal2png
xtal2png: A Python package for representing crystal structure as PNG files - Published in JOSS (2022)
HofstadterTools
HofstadterTools: A Python package for analyzing the Hofstadter model - Published in JOSS (2024)
AuDoLab
AuDoLab: Automatic document labelling and classification for extremely unbalanced data - Published in JOSS (2021)
stanscofi and benchscofi
stanscofi and benchscofi: a new standard for drug repurposing by collaborative filtering - Published in JOSS (2024)
NEMSEER
NEMSEER: A Python package for downloading and handling historical National Electricity Market forecast data produced by the Australian Energy Market Operator - Published in JOSS (2023)
hillmaker
hillmaker: A Python package for occupancy analysis in discrete entity flow systems - Published in JOSS (2024)
BIDSonym
BIDSonym: a BIDS App for the pseudo-anonymization of neuroimaging datasets - Published in JOSS (2021)
autoplotly
autoplotly: An R package for automatic generation of interactive visualizations for statistical results - Published in JOSS (2018)
UglyMol
UglyMol: a WebGL macromolecular viewer focused on the electron density - Published in JOSS (2017)
weatherOz
weatherOz: An API Client for Australian Weather and Climate Data Resources in R - Published in JOSS (2024)
filltex
filltex: Automatic queries to ADS and INSPIRE databases to fill LaTex bibliography - Published in JOSS (2017)
ivadomed
ivadomed: A Medical Imaging Deep Learning Toolbox - Published in JOSS (2021)
GoFish
GoFish: Fishing for Line Observations in Protoplanetary Disks - Published in JOSS (2019)
Exploring meaningful visual effects and quantities of interest from dynamic models through dynamac
Exploring meaningful visual effects and quantities of interest from dynamic models through dynamac - Published in JOSS (2020)
SCONE
SCONE: Open Source Software for Predictive Simulation of Biological Motion - Published in JOSS (2019)
pygamma-agreement
pygamma-agreement: Gamma γ measure for inter/intra-annotator agreement in Python - Published in JOSS (2021)
ClusterValidityIndices.jl
ClusterValidityIndices.jl: Batch and Incremental Metrics for Unsupervised Learning - Published in JOSS (2022)
SurfinPy 2.0
SurfinPy 2.0: A Phase Diagram Generator for Surfaces and Bulk Phases - Published in JOSS (2022)
EspressoDB
EspressoDB: A scientific database for managing high-performance computing workflows - Published in JOSS (2020)
LightLogR
LightLogR: Reproducible analysis of personal light exposure data - Published in JOSS (2025)
City2BA
City2BA: Tools for creating synthetic bundle adjustment problems - Published in JOSS (2023)
Spiral
Spiral: splitters for identifiers in source code files - Published in JOSS (2018)
SGMCMCJax
SGMCMCJax: a lightweight JAX library for stochastic gradient Markov chain Monte Carlo algorithms - Published in JOSS (2022)
Chaste
Chaste: Cancer, Heart and Soft Tissue Environment - Published in JOSS (2020)
SmartEDA
SmartEDA: An R Package for Automated Exploratory Data Analysis - Published in JOSS (2019)
shmem4py
shmem4py: OpenSHMEM for Python - Published in JOSS (2023)
ExoRad 2.0
ExoRad 2.0: The generic point source radiometric model - Published in JOSS (2023)
shar
shar: An R package to analyze species-habitat associations using point pattern analysis - Published in JOSS (2021)
The Pulsar Signal Simulator
The Pulsar Signal Simulator: A Python package for simulating radio signal data from pulsars - Published in JOSS (2021)
ipc
ipc: An R Package for Inter-process Communication - Published in JOSS (2018)
BoboCEP
BoboCEP: a Fault-Tolerant Complex Event Processing Engine for Edge Computing in Internet of Things - Published in JOSS (2023)
infotheory
infotheory: A C++/Python package for multivariate information theoretic analysis - Published in JOSS (2020)