Updated 10 months ago

dendextend • Rank 21.0 • Science 49%

Extending R's Dendrogram Functionality

Scientific Software
Updated 10 months ago

JuliaCall — Peer-reviewed • Rank 21.0 • Science 49%

JuliaCall: an R package for seamless integration between R and Julia - Published in JOSS (2019)

Engineering (40%)
Scientific Software · Peer-reviewed
Updated 10 months ago

deepcell • Rank 16.0 • Science 54%

Deep Learning Library for Single Cell Analysis

Updated 10 months ago

casile • Rank 16.0 • Science 54%

The CaSILE toolkit, a book publishing workflow employing SILE and other wizardry.

Updated 10 months ago

rsparse • Rank 13.0 • Science 57%

A Rust library for solving sparse linear systems using direct methods.

Updated 10 months ago

praat-parselmouth • Rank 21.0 • Science 49%

Praat in Python, the Pythonic way

Updated 10 months ago

pyzmq • Rank 34.0 • Science 36%

PyZMQ: Python bindings for zeromq

Updated 10 months ago

AtiyahBott • Rank 3.0 • Science 67%

An implementation of the Atiyah-Bott formula for the moduli space of genus 0 stable maps.

Updated 10 months ago

caltechthesis • Rank 3.0 • Science 67%

A test version of CaltechTHESIS on InvenioRDM

Updated 10 months ago

benchmarks-acoustic-propagation • Rank 3.0 • Science 67%

Coupled model development for acoustic propagation through multilayer systems for particle-velocity sensors

Updated 10 months ago

radius_clustering • Rank 3.0 • Science 67%

Source code repository of the Radius clustering python package.

Updated 10 months ago

nlesc-flamingo • Rank 6.0 • Science 64%

Computation and filtering of molecular properties

Updated 10 months ago

torsiondrive • Rank 6.0 • Science 64%

Dihedral scanner with wavefront propagation

Updated 10 months ago

u-root • Rank 34.0 • Science 36%

A fully Go userland with Linux bootloaders! u-root can create a one-binary root file system (initramfs) containing a busybox-like set of tools written in Go.

Updated 10 months ago

org.webjars.npm:nearley • Rank 13.0 • Science 57%

📜🔜🌲 Simple, fast, powerful parser toolkit for JavaScript.

Updated 10 months ago

ckanext-iiif • Rank 8.0 • Science 62%

CKAN IIIF extension

Updated 10 months ago

duckdb • Rank 34.0 • Science 36%

DuckDB is an analytical in-process SQL database management system

Updated 10 months ago

mlfit • Rank 11.0 • Science 59%

Implementation of algorithms that extend IPF to nested structures

Updated 10 months ago

golem • Rank 6.0 • Science 64%

GOLEM is a numerical simulator for modelling coupled Thermo-Hydro-Mechanical processes in faulted geothermal reservoirs.

Updated 10 months ago

ctlearn • Rank 11.0 • Science 59%

Deep Learning for IACT Event Reconstruction

Updated 10 months ago

btlemap • Rank 5.9 • Science 64%

Nmap for Bluetooth Low Energy

Updated 10 months ago

rockyml • Rank 2.9 • Science 67%

⛰️ RockyML - A High-Performance Scientific Computing Framework for Non-smooth Machine Learning Problems

Updated 10 months ago

sichash • Rank 2.9 • Science 67%

A (Minimal) Perfect Hash Function based on irregular cuckoo hashing, retrieval, and overloading.

Updated 10 months ago

ieee118_power_flow_data • Rank 2.9 • Science 67%

Data pipeline to build power flow cases of IEEE-118 power system

Updated 10 months ago

choclo • Rank 12.9 • Science 57%

Kernel functions for your geophysical models

Updated 10 months ago

lsstdesc-weaklensingdeblending • Rank 5.9 • Science 64%

Weak lensing fast simulations and analysis of blended objects.

Updated 10 months ago

gitpython • Rank 33.9 • Science 36%

GitPython is a python library used to interact with Git repositories.

Updated 10 months ago

eduos-rs • Rank 7.9 • Science 62%

A teaching operating system written in Rust

Updated 10 months ago

foliage • Rank 7.9 • Science 62%

Foliage is the FOLIo chAnGe Editor, a tool to do bulk changes in FOLIO using the network API.

Updated 10 months ago

cosipy • Rank 10.9 • Science 59%

Coupled snowpack and ice surface energy and mass balance model in Python

Updated 10 months ago

DataDeps • Rank 15.9 • Science 54%

reproducible data setup for reproducible science

Updated 10 months ago

atmorep • Rank 5.9 • Science 64%

AtmoRep model code

Updated 10 months ago

tethys-platform • Rank 15.9 • Science 54%

The Tethys Platform main Django website project repository.

Updated 10 months ago

torchdynamo • Rank 15.9 • Science 54%

A Python-level JIT compiler designed to make unmodified PyTorch programs faster.

Updated 10 months ago

df3d • Rank 12.9 • Science 57%

Motion capture (markerless 3D pose estimation) pipeline and helper GUI for tethered Drosophila.

Updated 10 months ago

raer • Rank 12.9 • Science 57%

Characterize A-to-I RNA editing in bulk and single-cell RNA sequencing experiments

Updated 10 months ago

enhancing_reaxff_dft_database • Rank 2.9 • Science 67%

Database used for retraining the ReaxFF force field for the inorganic compound LiF.

Updated 10 months ago

radseq • Rank 2.9 • Science 67%

Variant-calling pipeline for Restriction site-associated DNA sequencing (RADseq).

Updated 10 months ago

cato • Rank 2.9 • Science 67%

Automatic source transformation to apply HPC frameworks with minimal user interaction

Updated 10 months ago

mips • Rank 2.9 • Science 67%

MIPS – MATPOWER Interior Point Solver for nonlinear optimization problems.

Scientific Software
Updated 10 months ago

Enlsip.jl — Peer-reviewed • Rank 2.9 • Science 67%

Enlsip.jl: A Julia optimization package to solve constrained nonlinear least-squares problems - Published in JOSS (2024)

Engineering
Scientific Software · Peer-reviewed
Updated 10 months ago

NarmViz • Rank 2.9 • Science 67%

Visualize time series numerical association rules

Updated 10 months ago

monetio • Rank 7.9 • Science 62%

The Model and ObservatioN Evaluation Tool I/O package

Updated 10 months ago

burn • Rank 33.9 • Science 36%

Burn is a next generation Deep Learning Framework that doesn't compromise on flexibility, efficiency and portability.

Updated 10 months ago

api_nodetest • Rank 5.9 • Science 64%

node.js and express implementation for the Neotoma API

Updated 10 months ago

saintbioutils • Rank 5.9 • Science 64%

Repository of utility and miscellaneous functions for using in bioinformatics pipelines, primarily in Python

Updated 10 months ago

tooth-detection-and-numbering • Rank 5.8 • Science 64%

T.C. Maltepe University Graduate Project (Tooth Detection and Numbering From Panoramic Radiography Adult Patients Using Artificial Neural Network)

Updated 10 months ago

tximport • Rank 20.8 • Science 49%

Transcript quantification import for modular pipelines

Updated 10 months ago

matlab-novice • Rank 7.8 • Science 62%

Programming with MATLAB

Updated 10 months ago

simona • Rank 7.8 • Science 62%

simona is an agent-based discrete-event power system simulation model developed @ie3-institute

Updated 10 months ago

stable-diffusion-webui-forge • Rank 15.8 • Science 54%

Artificial Intelligence and Machine Learning Computer Science
Updated 10 months ago

nico_tutorial • Rank 2.8 • Science 67%

A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and statistically enriched covariation of gene programs between interacting cell types from the neighborhood.

Updated 10 months ago

kannada-transliterate • Rank 2.8 • Science 67%

Transliterator between ಕನ್ನಡ (kannaḍa) and Latin script based on IAST & ISO 15919

Updated 10 months ago

ckanext-versioned-tiledmap • Rank 7.8 • Science 62%

A CKAN extension with a map view for versioned-datastore backed resources.

Updated 10 months ago

ckanext-userdatasets • Rank 7.8 • Science 62%

A CKAN extension that allows organisation members to create datasets, and edit or delete the datasets they have created.

Updated 10 months ago

mxnet.sharp • Rank 15.8 • Science 54%

.NET Standard bindings for Apache MxNet with Imperative, Symbolic and Gluon Interface for developing, training and deploying Machine Learning models in C#. https://mxnet.tech-quantum.com/

Updated 10 months ago

circuitscape.jl • Rank 12.8 • Science 57%

Algorithms from circuit theory to predict connectivity in heterogeneous landscapes

Updated 10 months ago

pysiral • Rank 5.8 • Science 64%

python package for scientific computing (satellite radar altimetry over ice-covered ocean)

Updated 10 months ago

xtb • Rank 12.8 • Science 57%

Semiempirical Extended Tight-Binding Program Package

Updated 10 months ago

ocr-fileformat • Rank 7.8 • Science 62%

Validate and transform various OCR file formats (hOCR, ALTO, PAGE, FineReader)

Updated 10 months ago

ika-rwth-aachen/docker-ros • Rank 7.8 • Science 62%

docker-ros automatically builds development and deployment Docker images for your ROS-based repositories

Updated 10 months ago

solutions_calculator • Rank 2.8 • Science 67%

Interactive solutions calculator built with Shiny and R that allows users to compute mass, volume, or molarity based on combinations of those variables. The app automatically retrieves the compound’s molecular weight from the PubChem database using the webchem package.

Updated 10 months ago

mpiwrapper • Rank 2.8 • Science 67%

A wrapper for MPI libraries, implementing an MPI ABI

Updated 10 months ago

csvconf2023 • Rank 2.8 • Science 67%

Slides and resources from my CSV Conf 2023 keynote

Updated 10 months ago

polydeal • Rank 2.8 • Science 67%

C++ implementation of Polygonal Discontinuous Galerkin method within the deal.II Finite Element library.

Updated 10 months ago

RelevancePropagation • Rank 2.8 • Science 67%

Layerwise Relevance Propagation in Julia.

Updated 10 months ago

nlesc-serverless-boilerplate • Rank 2.8 • Science 67%

An AWS amplify boilerplate web application

Updated 10 months ago

bingclaw_5.6.1 • Rank 2.8 • Science 67%

BingClaw software for simulating landslide dynamics (requires ClawPACK version 5.6.1)

Engineering (31%)
Updated 10 months ago

regressors-regressions-dataset • Rank 2.8 • Science 67%

Dataset of bug-introducing and bug-fixing commit sets from Mozilla's Bugzilla

Updated 10 months ago

medea • Rank 2.8 • Science 67%

Meteorology Dependent Emission Algorithms

Updated 10 months ago

lubm4obda • Rank 2.8 • Science 67%

Inference and Meta Knowledge Benchmarking of OBDA Systems

Updated 10 months ago

long-term-validation-of-inner-urban-mobility-metrics-derived-from-twitter • Rank 2.8 • Science 67%

Long-term validation of inner-urban mobility metrics derived from Twitter

Updated 10 months ago

nlp-progress • Rank 15.8 • Science 54%

Repository to track the progress in Natural Language Processing (NLP), including the datasets and the current state-of-the-art for the most common NLP tasks.

Updated 10 months ago

emsarray • Rank 7.8 • Science 62%

xarray extension that supports EMS model formats

Updated 10 months ago

ctaplot • Rank 10.7 • Science 59%

Plotting library for CTA and other IACT

Updated 10 months ago

NURBS • Rank 5.7 • Science 64%

This package provides functionality to define and evaluate B-spline and NURBS (non-uniform rational B-spline) basis functions, their derivatives, as well as curves and surfaces based on both considered basis functions.

Updated 10 months ago

paleomix • Rank 10.7 • Science 59%

Pipelines and tools for the processing of ancient and modern HTS data.

Updated 10 months ago

pynaco • Rank 7.7 • Science 62%

Python Implementation of NACO Normalization Rules

Updated 10 months ago

metatag • Rank 2.7 • Science 67%

metaTag: functional and taxonomical annotation of metagenomes through phylogenetic tree placement

Updated 10 months ago

sars-cov-2-pcr-testungen_in_deutschland • Rank 2.7 • Science 67%

Im Rahmen der Bewältigung der COVID-19-Pandemie spielt die Diagnostik hinsichtlich SARS-CoV-2/COVID-19 eine entscheidende Rolle. Die Bedeutung liegt nicht nur in der diagnostischen Abklärung, sondern hat eine herausragende Stellung auch für die Beurteilung der epidemiologischen Entwicklung und hinsichtlich Strategien zur Verlangsamung des aktuellen Geschehens in Deutschland. Die Erfassung der durchgeführten PCR-Tests sowie die Ermittlung des Anteils der SARS-CoV-2 positiven PCR-Tests ermöglichen eine Einschätzung zur Wirksamkeit der Maßnahmen und der Umsetzung der Teststrategie. Vor diesem Hintergrund werden im Datensatz an das RKI übermittelte Daten zu PCR-Testungen, PCR-Testergebnissen und Testkapazitäten in Deutschland als offene Daten bereitgestellt.