astroml • Rank 18.0 • Science 51%

Machine learning, statistics, and data mining for astronomy and astrophysics

helminthR • Rank 10.0 • Science 59%

Accesses parasite occurrence records from the London Natural History Museum's Host-Parasite database, which contains over a quarter of a million helminth records.

UnitCommitment • Rank 10.0 • Science 59%

Optimization package for the Security-Constrained Unit Commitment Problem

twine • Rank 33.0 • Science 36%

Utilities for interacting with PyPI

fusta • Rank 12.0 • Science 57%

A FUSE filesystem to browse & edit FASTA files

fsrs • Rank 25.0 • Science 44%

FSRS for Rust, including Optimizer and Scheduler

phys2cvr • Rank 10.0 • Science 59%

python module to compute cerebrovascular reactivity mapping and other related maps

finbif • Rank 1.9 • Science 67%

R interface for the Finnish Biodiversity Information Facility (FinBIF) API

r-dupnodes • Rank 1.9 • Science 67%

"Duplicated nodes" method for social networks with self-loops

autotuning_methodology • Rank 1.9 • Science 67%

This software package accompanies the paper "A Methodology for Comparing Auto-Tuning Optimization Algorithms" (https://doi.org/10.1016/j.future.2024.05.021), making the guidelines in the methodology easy to apply.

zho-tts • Rank 1.9 • Science 67%

Web app, command-line interface and Python library for synthesizing Chinese texts into speech.

guardrails • Rank 1.9 • Science 67%

VSCode extension to help developers set up guardrails around their functions, by helping them disambiguate purpose statements.

osai_ecosystem • Rank 1.9 • Science 67%

A community-curated list of Open and Sustainable AI (OSAI) ecosystem components mapped to practical recommendations to guide their use for research.

nominatimlite • Rank 11.9 • Science 57%

Lite interface for getting data from OSM geocoder service.

mock • Rank 32.9 • Science 36%

The Python mock library

LabelledArrays • Rank 14.9 • Science 54%

Arrays which also have a label for each element for easy scientific machine learning (SciML)

genometric.mspc.core • Rank 14.9 • Science 54%

Using combined evidence from replicates to evaluate ChIP-seq peaks

opendrift • Rank 9.9 • Science 59%

Open source framework for ocean trajectory modelling

pytorch-benchmark • Rank 11.9 • Science 57%

Easily benchmark PyTorch model FLOPs, latency, throughput, allocated gpu memory and energy consumption

roiextractors • Rank 14.9 • Science 54%

Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by SpikeInterface.

pytorchts • Rank 14.9 • Science 54%

PyTorch based Probabilistic Time Series forecasting framework based on GluonTS backend

molbloom • Rank 14.9 • Science 54%

Molecular bloom filter tool

pkglite • Rank 11.9 • Science 57%

Compact Package Representations

pyranges • Rank 19.9 • Science 49%

Performant Pythonic GenomicRanges

forest-risks • Rank 9.9 • Science 59%

statistical models of forest carbon potential and risks

hyperfine • Rank 14.9 • Science 54%

A command-line benchmarking tool

microsoft.coyote • Rank 24.9 • Science 44%

Coyote is a library and tool for testing concurrent C# code and deterministically reproducing bugs.

showyourwork • Rank 14.9 • Science 54%

A workflow for reproducible and open scientific articles

dgmr • Rank 14.9 • Science 54%

Implementation of DeepMind's Deep Generative Model of Radar (DGMR) https://arxiv.org/abs/2104.00954

draco2 • Rank 6.9 • Science 62%

🐉 Modular version of Draco visualization recommendation engine

radis • Rank 9.9 • Science 59%

🌱 A fast line-by-line code for high-resolution infrared molecular spectra

oq-engine • Rank 19.9 • Science 49%

OpenQuake Engine: a software for Seismic Hazard and Risk Analysis

llms-from-scratch • Rank 14.9 • Science 54%

Implement a ChatGPT-like LLM in PyTorch from scratch, step by step

menetools • Rank 9.9 • Science 59%

MeneTools are Python3 tools to explore the topology of metabolic networks. It includes Menecheck, Menescope, Menepath and Menecof.

fooddatacentral • Rank 4.9 • Science 64%

Python code to obtain information from the USDA's Food Data Central data project.

rzk • Rank 14.9 • Science 54%

An experimental proof assistant based on a type theory for synthetic ∞-categories.

mapsf • Rank 6.8 • Science 62%

Thematic cartography with R

pulpo • Rank 9.8 • Science 59%

Python package for life cycle optimization

kedro • Rank 14.8 • Science 54%

Kedro is a toolbox for production-ready data science. It uses software engineering best practices to help you create data engineering and data science pipelines that are reproducible, maintainable, and modular.

conexp-clj • Rank 14.8 • Science 54%

A General-Purpose Tool for Formal Concept Analysis

https://github.com/moble/quaternion • Rank 22.8 • Science 46%

Add built-in support for quaternions to numpy

openff-forcefields • Rank 9.8 • Science 59%

Force fields produced by the Open Force Field Initiative

pds-api • Rank 9.8 • Science 59%

PDS web APIs specifications and user's manual

assessments-map • Rank 1.8 • Science 67%

Map of IUCN Red List of Ecosystem assessments

iexfinder • Rank 1.8 • Science 67%

Interactive calculation of extreme values with Python

reproducibility-icwsm25 • Rank 1.8 • Science 67%

Materials for the 2025 ICWSM workshop sessions on Computational Reproducibility and the Methods Hub

corona-datenspende_teildatensatz_erleben_und_verhalten_in_der_pandemie • Rank 1.8 • Science 67%

Die Daten von Fitnessarmbändern und Smartwatches, sogenannten Wearables, können Hinweise auf Symptome einer Infektion mit COVID-19 liefern. Mit Hilfe der Corona-Datenspende-App (CDA) können Bürger:innen dem Robert Koch-Institut diese Daten zur wissenschaftlichen Auswertung zur Verfügung stellen. Zusammen mit Informationen aus anderen Quellen, z.B.

sari-hospitalisierungsinzidenz • Rank 1.8 • Science 67%

Zur Einschätzung der Krankheitslast schwerer symptomatischer Atemwegsinfektionen im stationären Bereich wird mithilfe von Daten aus der syndromischen Krankenhaussurveillance ICOSARI die Inzidenz der Fälle, die mit einer schweren akuten respiratorischen Infektion (SARI) in ein Krankenhaus zur Behandlung aufgenommen wurden, pro 100.000 Einwohner b...

mlso • Rank 1.8 • Science 67%

The Machine Learning Sailor Ontology

omopvocabmapper.jl • Rank 1.8 • Science 67%

epitome • Rank 1.8 • Science 67%

🐍 Demonstration Python package using the PDS template

des_agent • Rank 1.8 • Science 67%

An AI agent that can discovery, run, experiment, and report results from any DES model setup as a MCP server.

genbankpy • Rank 1.8 • Science 67%

Tools to download, parse and filter GenBank files

access-om2-01_ecologicallyrelevantvariables • Rank 1.8 • Science 67%

This repository contains all material necessary to reproduce the figures and summary statistics presented in the publication Analysis of ecologically relevant sea ice and ocean variables for the Southern Ocean using a high-resolution model to inform ecosystem studies.

peppermodules-toolboxtextmodules • Rank 1.8 • Science 67%

figures • Rank 1.8 • Science 67%

jupitermag • Rank 1.8 • Science 67%

Jupiter magnetic field model(s)

vaes • Rank 1.8 • Science 67%

Reproducible code showing the various types of variational autoencoders I have implemented

eecology-sms-reciever • Rank 1.8 • Science 67%

Webservice to store SMS messages into a database table

nuuchahnulth • Rank 1.8 • Science 67%

Linguistic data on the Nuuchahnulth (Wakashan) language

henkes_gan • Rank 1.8 • Science 67%

Code of the publication "Three-dimensional microstructure generation using generative adversarial neural networks in the context of continuum micromechanics" published in https://doi.org/10.1016/j.cma.2022.115497 by Alexander Henkes and Henning Wessels from TU Braunschweig.

https://github.com/bluebrain/me-types-mapper • Rank 1.8 • Science 67%

lavaca-nutrients • Rank 1.8 • Science 67%

Data and code repository for Lavaca Bay nutrient loading project.

nightshift • Rank 1.8 • Science 67%

A python library and command line program for plotting simulated 2D and 3D NMR spectra from assigned chemical shifts from the BMRB

nordatlantisk-ft • Rank 1.8 • Science 67%

Voting Records of Greenlandic and Faroese MPs in Folketinget

pyrexMD — Peer-reviewed • Rank 1.8 • Science 67%

pyrexMD: Workflow-Orientated Python Package for Replica Exchange Molecular Dynamics - Published in JOSS (2021)

english-text-normalization • Rank 1.8 • Science 67%

Command-line interface (CLI) and library to normalize English texts.

lintf2_ether_ana_postproc • Rank 1.8 • Science 67%

Analysis postprocessing utilities for my molecular dynamics simulations of LiTFSI-Ether mixtures

polygeist-script • Rank 4.8 • Science 64%

HCubature • Rank 14.8 • Science 54%

pure-Julia multidimensional h-adaptive integration

jsonpickle • Rank 32.8 • Science 36%

Python library for serializing any arbitrary object graph into JSON. It can take almost any Python object and turn the object into JSON. Additionally, it can reconstitute the object back into Python.

https://github.com/arjunsavel/simmer • Rank 9.8 • Science 59%

An open-source & modular reduction pipeline for astronomical images of point sources.

fmi4cpp • Rank 6.8 • Science 62%

FMI 2.0 implementation written in modern C++.

SteadyStateDiffEq • Rank 14.8 • Science 54%

Solvers for steady states in scientific machine learning (SciML)

pika • Rank 32.8 • Science 36%

Pure Python RabbitMQ/AMQP 0-9-1 client library

dataciteapi • Rank 3.7 • Science 65%

A Golang package and command line utility for working with the public DataCite API

fastrag • Rank 14.7 • Science 54%

Efficient Retrieval Augmentation and Generation Framework

brainweb • Rank 9.7 • Science 59%

BrainWeb: Multimodal models of 20 normal brains

skopeui • Rank 4.7 • Science 64%

SKOPE user interface and visualization app

twisted • Rank 32.7 • Science 36%

Event-driven networking engine written in Python.

euphonic • Rank 14.7 • Science 54%

Euphonic is a Python package for efficient simulation of phonon bandstructures, density of states and inelastic neutron scattering intensities from force constants.

qupulse • Rank 14.7 • Science 54%

Quantum Computing Toolkit for Qubit Control

streamlit • Rank 32.7 • Science 36%

Streamlit — A faster way to build and share data apps.

https://github.com/clima/climacore.jl • Rank 14.7 • Science 54%

CliMA model dycore

GGally • Rank 22.7 • Science 46%

R package that extends ggplot2

rethnicity • Rank 9.7 • Science 59%

predict ethnicity from names

wntr • Rank 19.7 • Science 49%

An EPANET compatible python package to simulate and analyze water distribution networks under disaster scenarios.

openpifpaf • Rank 17.7 • Science 51%

Official implementation of "OpenPifPaf: Composite Fields for Semantic Keypoint Detection and Spatio-Temporal Association" in PyTorch.

smoove • Rank 14.7 • Science 54%

structural variant calling and genotyping with existing tools, but, smoothly.

https://github.com/astropy/reproject • Rank 19.7 • Science 49%

Python-based Astronomical image reprojection :milky_way: - maintainer @astrofrog

metacg • Rank 6.7 • Science 62%

MetaCG offers an annotated whole program call-graph tool for Clang/LLVM.

ckanext-status • Rank 6.7 • Science 62%

A CKAN extension that adds a 'status' bar to the top of the page.

pycapsid • Rank 9.7 • Science 59%

Python package to extract quasi-rigid domains in protein shells and other macromolecular complexes.

prospector • Rank 32.6 • Science 36%

Inspects Python source files and provides information about type and location of classes, methods etc

ddpo-overopt • Rank 4.6 • Science 64%

imp • Rank 9.6 • Science 59%

The Integrative Modeling Platform

awesome-remote-sensing-change-detection • Rank 9.6 • Science 59%

List of datasets, codes, and contests related to remote sensing change detection

pds.deeparchive • Rank 9.6 • Science 59%

PDS Open Archival Information System (OAIS) utilities, including Submission Information Package (SIP) and Archive Information Package (AIP) generators

standR • Rank 14.6 • Science 54%

Spatial transcriptomics analyses and decoding in R

edu.arizona.sista:processors_2.11 • Rank 14.6 • Science 54%

Natural Language Processors