Updated 10 months ago

geocat-examples • Rank 7.9 • Science 85%

GeoCAT-examples provides a gallery of visualization examples demonstrating how to reproduce plots from NCL Applications scripts with packages in Python. It also includes some longer form examples demonstrating how to use functionality from various GeoCAT packages.

Updated 10 months ago

kangas • Rank 15.9 • Science 77%

🦘 Explore multimedia datasets at scale

Updated 10 months ago

cytoscape-cose-bilkent • Rank 28.8 • Science 64%

The CoSE layout for Cytoscape.js by Bilkent with enhanced compound node placement.

Scientific Software
Updated 10 months ago

naturf — Peer-reviewed • Rank 7.8 • Science 85%

naturf: a package for generating urban parameters for numerical weather modeling - Published in JOSS (2024)

Engineering (40%)
Scientific Software · Peer-reviewed
Updated 10 months ago

pypartmc • Rank 15.8 • Science 77%

Python (and C++) interface to PartMC with Jupyter/Python, Julia and Matlab examples

Updated 10 months ago

addchain • Rank 25.7 • Science 67%

Cryptographic Addition Chain Generation in Go

Updated 6 months ago

IBBI: A Python package for the detection and classification of bark and ambrosia beetles • Rank 5.7 • Science 87%

IBBI: A Python package for the detection and classification of bark and ambrosia beetles - Published in JOSS (2025)

Scientific Software
Updated 10 months ago

DARE Platform — Peer-reviewed • Rank 3.7 • Science 89%

DARE Platform: a Developer-Friendly and Self-Optimising Workflows-as-a-Service Framework for e-Science on the Cloud - Published in JOSS (2020)

Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

InsarViz — Peer-reviewed • Rank 3.7 • Science 89%

InsarViz: An open source Python package for the interactive visualization of satellite SAR interferometry data - Published in JOSS (2024)

Scientific Software · Peer-reviewed
Updated 10 months ago

tractor.base • Rank 15.7 • Science 77%

Magnetic resonance imaging and tractography with R

Updated 10 months ago

plotnine • Rank 28.7 • Science 64%

A Grammar of Graphics for Python

Updated 10 months ago

autopytorch • Rank 15.6 • Science 77%

Automatic architecture search and hyperparameter optimization for PyTorch

Updated 10 months ago

jwst • Rank 20.6 • Science 72%

Python library for science observations from the James Webb Space Telescope

Updated 10 months ago

ggplot2 • Rank 33.6 • Science 59%

An implementation of the Grammar of Graphics in R

Updated about 2 months ago

scarlet2: Astronomical scene modeling in JAX • Rank 5.6 • Science 87%

scarlet2: Astronomical scene modeling in JAX - Published in JOSS (2026)

Scientific Software
Updated 10 months ago

OnToCode — Peer-reviewed • Rank 3.6 • Science 89%

OnToCode: Template-based code-generation from ontologies - Published in JOSS (2019)

Computer Science (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

Biotrade — Peer-reviewed • Rank 5.6 • Science 87%

Biotrade: A Python package to access and analyse the international trade of bio-based products - Published in JOSS (2023)

Mathematics (37%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

Madym — Peer-reviewed • Rank 3.6 • Science 89%

Madym: A C++ toolkit for quantitative DCE-MRI analysis - Published in JOSS (2021)

Scientific Software · Peer-reviewed
Updated 3 months ago

Discovering the SUPER in computing - dagster-slurm for reproducible research on HPC • Rank 5.5 • Science 87%

Discovering the SUPER in computing - dagster-slurm for reproducible research on HPC - Published in JOSS (2026)

Scientific Software
Updated 10 months ago

MUQ — Peer-reviewed • Rank 3.5 • Science 89%

MUQ: The MIT Uncertainty Quantification Library - Published in JOSS (2021)

Scientific Software · Peer-reviewed
Updated 10 months ago

helm • Rank 20.5 • Science 72%

Holistic Evaluation of Language Models (HELM) is an open source Python framework created by the Center for Research on Foundation Models (CRFM) at Stanford for holistic, reproducible and transparent evaluation of foundation models, including large language models (LLMs) and multimodal models.

Updated 5 months ago

Pop2net: Bipartite network generation for agent-based modeling • Rank 5.5 • Science 87%

Pop2net: Bipartite network generation for agent-based modeling - Published in JOSS (2026)

Updated 10 months ago

pythermalcomfort • Rank 17.5 • Science 75%

Package to calculate several thermal comfort indices (e.g. PMV, PPD, SET, adaptive) and convert physical variables.

Updated about 1 month ago

dySEM: An <em>R</em> Package for Dyadic Structural Equation Modeling with Latent Variables • Rank 5.5 • Science 87%

dySEM: An <em>R</em> Package for Dyadic Structural Equation Modeling with Latent Variables - Published in JOSS (2026)

Updated 3 months ago

idiolect: An R package for forensic authorship analysis • Rank 5.4 • Science 87%

idiolect: An R package for forensic authorship analysis - Published in JOSS (2026)

Scientific Software
Updated 10 months ago

Fast k-medoids Clustering in Rust and Python — Peer-reviewed • Rank 15.4 • Science 77%

Fast k-medoids Clustering in Rust and Python - Published in JOSS (2022)

Artificial Intelligence and Machine Learning (37%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

H-RISK with NoiseModelling — Peer-reviewed • Rank 3.4 • Science 89%

H-RISK with NoiseModelling: a QGIS plugin to predict environmental noise and estimate health risks - Published in JOSS (2024)

Computer Science (33%)
Scientific Software · Peer-reviewed
Updated 10 months ago

tequila-basic • Rank 15.4 • Science 77%

A High-Level Abstraction Framework for Quantum Algorithms

Updated 3 months ago

Crux.jl: Deep Reinforcement Learning in Julia • Rank 5.4 • Science 87%

Crux.jl: Deep Reinforcement Learning in Julia - Published in JOSS (2026)

Updated 7 months ago

Bijx: Bijections and normalizing flows with JAX/NNX • Rank 5.4 • Science 87%

Bijx: Bijections and normalizing flows with JAX/NNX - Published in JOSS (2025)

Updated 10 months ago

kda • Rank 7.4 • Science 85%

Python package used for the analysis of biochemical kinetic diagrams.

Updated 10 months ago

py-aiger • Rank 15.4 • Science 77%

py-aiger: A python library for manipulating sequential and combinatorial circuits encoded using `and` & `inverter` gates (AIGs).

Updated 10 months ago

vizarr • Rank 7.4 • Science 85%

A minimal Zarr image viewer based on Viv.

Updated 10 months ago

metall • Rank 7.4 • Science 85%

Persistent memory allocator for data-centric analytics

Updated 10 months ago

DynamicPolynomials • Rank 15.3 • Science 77%

Multivariate polynomials implementation of commutative and non-commutative variables

Updated 10 months ago

quantlib • Rank 15.3 • Science 77%

The QuantLib C++ library

Updated 10 months ago

hatchet • Rank 7.3 • Science 85%

Graph-indexed Pandas DataFrames for analyzing hierarchical performance data

Scientific Software
Updated 10 months ago

NCDatasets.jl — Peer-reviewed • Rank 15.3 • Science 77%

NCDatasets.jl: a Julia package for manipulating netCDF data sets - Published in JOSS (2024)

Updated 10 months ago

legend-pydataobj • Rank 15.3 • Science 77%

LEGEND Python Data Objects

Scientific Software
Updated 10 months ago

ROSS - Rotordynamic Open Source Software — Peer-reviewed • Rank 15.3 • Science 77%

ROSS - Rotordynamic Open Source Software - Published in JOSS (2020)

Mathematics (37%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

BasicTools — Peer-reviewed • Rank 5.3 • Science 87%

BasicTools: a numerical simulation toolbox - Published in JOSS (2023)

Scientific Software · Peer-reviewed
Updated 10 months ago

ccpp-scm • Rank 7.3 • Science 85%

CCPP Single Column Model

Updated 10 months ago

isofit • Rank 15.3 • Science 77%

Imaging Spectrometer Optimal FITting (ISOFIT) contains a set of routines and utilities for fitting surface, atmosphere and instrument models to imaging spectrometer data.

Scientific Software
Updated 10 months ago

climpred — Peer-reviewed • Rank 15.2 • Science 77%

climpred: Verification of weather and climate forecasts - Published in JOSS (2021)

Scientific Software · Peer-reviewed
Updated 10 months ago

lorikeet-genome • Rank 15.2 • Science 77%

Strain resolver for metagenomics

Scientific Software
Updated 10 months ago

AQCNES — Peer-reviewed • Rank 3.2 • Science 89%

AQCNES: A Quasi-Continuum Non-Equilibrium Solver - Published in JOSS (2024)

Physics (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

A-SLOTH — Peer-reviewed • Rank 3.2 • Science 89%

A-SLOTH: Ancient Stars and Local Observables by Tracing Halos - Published in JOSS (2022)

Mathematics
Scientific Software · Peer-reviewed
Updated 10 months ago

scikit-mol • Rank 15.2 • Science 77%

scikit-learn classes for molecular vectorization using RDKit

Updated 10 months ago

imageio • Rank 33.2 • Science 59%

Python library for reading and writing image data

Updated 10 months ago

xmip • Rank 15.2 • Science 77%

Analysis ready CMIP6 data in python the easy way with pangeo tools.

Updated about 2 months ago

aimz: Scalable probabilistic impact modeling • Rank 5.1 • Science 87%

aimz: Scalable probabilistic impact modeling - Published in JOSS (2026)

Scientific Software
Updated 10 months ago

DuneCopasi — Peer-reviewed • Rank 3.1 • Science 89%

DuneCopasi: A multi-compartment reaction-diffusion simulator for systems biology - Published in JOSS (2024)

Scientific Software · Peer-reviewed
Updated 10 months ago

PowerSystems • Rank 15.1 • Science 77%

Data structures in Julia to enable power systems analysis. Part of the Scalable Integrated Infrastructure Planning Initiative at the National Renewable Energy Lab.

Scientific Software
Updated 10 months ago

PyCS3 — Peer-reviewed • Rank 3.0 • Science 89%

PyCS3: A Python toolbox for time-delay measurements in lensed quasars - Published in JOSS (2020)

Mathematics
Scientific Software · Peer-reviewed
Updated 5 months ago

gkwreg: An R Package for Generalized Kumaraswamy Regression Models for Bounded Data • Rank 5.0 • Science 87%

gkwreg: An R Package for Generalized Kumaraswamy Regression Models for Bounded Data - Published in JOSS (2026)

Updated 10 months ago

biochatter • Rank 15.0 • Science 77%

Backend library for conversational AI in biomedicine

Updated 7 months ago

fars_cleaner: A Python package for downloading and pre-processing vehicle fatality data in the US • Rank 5.0 • Science 87%

fars_cleaner: A Python package for downloading and pre-processing vehicle fatality data in the US - Published in JOSS (2022)

Updated 8 months ago

DeepTrees: Tree Crown Segmentation and Analysis in Remote Sensing Imagery with PyTorch • Rank 3.0 • Science 89%

DeepTrees: Tree Crown Segmentation and Analysis in Remote Sensing Imagery with PyTorch - Published in JOSS (2025)

Updated 3 months ago

Synthesizer: Synthetic Observables for Modern Astronomy • Rank 4.9 • Science 87%

Synthesizer: Synthetic Observables for Modern Astronomy - Published in JOSS (2026)

Updated 10 months ago

esm_tools • Rank 14.9 • Science 77%

Simple Infrastructure for Earth System Simulations

Updated 10 months ago

assuranceplatform • Rank 6.9 • Science 85%

Project to facilitate creation of Assurance Cases

Updated 10 months ago

vidore-benchmark • Rank 14.9 • Science 77%

Vision Document Retrieval (ViDoRe): Benchmark. Evaluation code for the ColPali paper.

Updated 10 months ago

fusion-blossom • Rank 14.8 • Science 77%

A fast minimum-weight perfect matching solver for quantum error correction

Updated 10 months ago

pylhe • Rank 14.8 • Science 77%

Lightweight Python interface to read Les Houches Event (LHE) files

Scientific Software
Updated 10 months ago

RISE — Peer-reviewed • Rank 4.8 • Science 87%

RISE: An R package for RISE analysis - Published in JOSS (2018)

Scientific Software · Peer-reviewed
Updated 10 months ago

qmflows • Rank 14.8 • Science 77%

This library tackles the construction and efficient execution of computational chemistry workflows

Updated 10 months ago

imaging-server-kit • Rank 6.8 • Science 85%

Deploy image processing algorithms in FastAPI servers and easily run them in Napari, QuPath, and more.

Scientific Software
Updated 10 months ago

Kamodo — Peer-reviewed • Rank 2.8 • Science 89%

Kamodo: A functional API for space weather models and data - Published in JOSS (2022)

Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

The MarINvaders Toolkit — Peer-reviewed • Rank 2.8 • Science 89%

The MarINvaders Toolkit - Published in JOSS (2021)

Political Science
Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

gLBM — Peer-reviewed • Rank 2.8 • Science 89%

gLBM: A GPU enabled Lattice Boltzmann Method Library - Published in JOSS (2022)

Scientific Software · Peer-reviewed
Updated 10 months ago

integron_finder • Rank 6.8 • Science 85%

Bioinformatics tool to find integrons in bacterial genomes

Earth and Environmental Sciences (40%)
Updated 10 months ago

poetry • Rank 37.7 • Science 54%

Python packaging and dependency management made easy

Updated 5 months ago

topoptlab: An Open and Modular Framework for Benchmarking and Research in Topology Optimization • Rank 4.7 • Science 87%

topoptlab: An Open and Modular Framework for Benchmarking and Research in Topology Optimization - Published in JOSS (2026)

Updated 10 months ago

ccompass • Rank 6.7 • Science 85%

A Neural Network Tool for Multi-Omic Classification of Cell Compartments

Updated 10 months ago

foyer • Rank 14.7 • Science 77%

A package for atom-typing as well as applying and disseminating forcefields

Updated 10 months ago

nomad-simulations • Rank 14.7 • Science 77%

A NOMAD plugin containing base sections for simulations.

Updated 10 months ago

shimmy • Rank 24.7 • Science 67%

An API conversion tool for popular external reinforcement learning environments

Updated 10 months ago

fastapi • Rank 37.7 • Science 54%

FastAPI framework, high performance, easy to learn, fast to code, ready for production