SweetBean
SweetBean: A declarative language for behavioral experiments with human and artificial participants - Published in JOSS (2025)
PyXAB - A Python Library for $\mathcal{X}$-Armed Bandit and Online Blackbox Optimization Algorithms
PyXAB - A Python Library for $\mathcal{X}$-Armed Bandit and Online Blackbox Optimization Algorithms - Published in JOSS (2024)
physical_validation
physical_validation: A Python package to assess the physical validity of molecular simulation results - Published in JOSS (2022)
covid19.analytics
covid19.analytics: An R Package to Obtain, Analyze and Visualize Data from the 2019 Coronavirus Disease Pandemic - Published in JOSS (2021)
mosartwmpy
mosartwmpy: A Python implementation of the MOSART-WM coupled hydrologic routing and water management model - Published in JOSS (2021)
Traja
Traja: A Python toolbox for animal trajectory analysis - Published in JOSS (2021)
salabim
salabim: discrete event simulation and animation in Python - Published in JOSS (2018)
SimpleFOC
SimpleFOC: A Field Oriented Control (FOC) Library for Controlling Brushless Direct Current (BLDC) and Stepper Motors - Published in JOSS (2022)
Simple DFT-D3
Simple DFT-D3: Library first implementation of the D3 dispersion correction - Published in JOSS (2024)
libEnsemble
libEnsemble: A complete Python toolkit for dynamic ensembles of calculations - Published in JOSS (2023)
imucal - A Python library to calibrate 6 DOF IMUs
imucal - A Python library to calibrate 6 DOF IMUs - Published in JOSS (2022)
pridepy
pridepy: A Python package to download and search data from PRIDE database - Published in JOSS (2025)
GALAHAD 4.0
GALAHAD 4.0: an open source library of Fortran packages with C and Matlab interfaces for continuous optimization - Published in JOSS (2023)
jstor
jstor: Import and Analyse Data from Scientific Texts - Published in JOSS (2018)
SpeechPy - A Library for Speech Processing and Recognition
SpeechPy - A Library for Speech Processing and Recognition - Published in JOSS (2018)
pyradiosky
pyradiosky: A Python package for Radio Sky Models - Published in JOSS (2024)
ZodiPy
ZodiPy: A Python package for zodiacal light simulations - Published in JOSS (2024)
Elephas
Elephas: Distributed Deep Learning with Keras & Spark - Published in JOSS (2022)
heatwaveR
heatwaveR: A central algorithm for the detection of heatwaves and cold-spells - Published in JOSS (2018)
Abmarl
Abmarl: Connecting Agent-Based Simulations with Multi-Agent Reinforcement Learning - Published in JOSS (2021)
Universal Numbers Library
Universal Numbers Library: Multi-format Variable Precision Arithmetic Library - Published in JOSS (2023)
Delve
Delve: Neural Network Feature Variance Analysis - Published in JOSS (2022)
HydroMT
HydroMT: Automated and reproducible model building and analysis - Published in JOSS (2023)
Zoomerjoin
Zoomerjoin: Superlatively-Fast Fuzzy Joins - Published in JOSS (2023)
quantile-forest
quantile-forest: A Python Package for Quantile Regression Forests - Published in JOSS (2024)
AnyPyTools
AnyPyTools: A Python package for reproducible research with the AnyBody Modeling System - Published in JOSS (2019)
sorn
sorn: A Python package for Self Organizing Recurrent Neural Network - Published in JOSS (2021)
epiworldR
epiworldR: Fast Agent-Based Epi Models - Published in JOSS (2023)
Representation and Manipulation of Genomic Tuples in R
Representation and Manipulation of Genomic Tuples in R - Published in JOSS (2016)
THzTools
THzTools: data analysis software for terahertz time-domain spectroscopy - Published in JOSS (2024)
academictwitteR
academictwitteR: an R package to access the Twitter Academic Research Product Track v2 API endpoint - Published in JOSS (2021)
quadkeyr
quadkeyr: Tools for converting QuadKey-identified datasets (Microsoft's Bing Maps Tile System) into raster images and analyzing Meta (Facebook) Mobility Data - Published in JOSS (2024)
comorbidity
comorbidity: An R package for computing comorbidity scores - Published in JOSS (2018)
HiddenMarkovModels.jl
HiddenMarkovModels.jl: generic, fast and reliable state space modeling - Published in JOSS (2024)
NiaARM
NiaARM: A minimalistic framework for Numerical Association Rule Mining - Published in JOSS (2022)
NiBetaSeries
NiBetaSeries: task related correlations in fMRI - Published in JOSS (2019)
presize
presize: An R-package for precision-based sample size calculation in clinical research - Published in JOSS (2021)
SPEI
SPEI: A Python package for calculating and visualizing drought indices - Published in JOSS (2025)
argopy
argopy: A Python library for Argo ocean data analysis - Published in JOSS (2020)
stimupy
stimupy: A Python package for creating stimuli in vision science - Published in JOSS (2023)
Nextclade
Nextclade: clade assignment, mutation calling and quality control for viral genomes - Published in JOSS (2021)
Cellpy – an open-source library for processing and analysis of battery testing data
Cellpy – an open-source library for processing and analysis of battery testing data - Published in JOSS (2024)
planetMagFields
planetMagFields: A Python package for analyzing and plotting planetary magnetic field data - Published in JOSS (2024)
epyc
epyc: Computational experiment management in Python - Published in JOSS (2022)
statsExpressions
statsExpressions: R Package for Tidy Dataframes and Expressions with Statistical Details - Published in JOSS (2021)
matbench-genmetrics
matbench-genmetrics: A Python library for benchmarking crystal structure generative models using time-based splits of Materials Project structures - Published in JOSS (2024)
REHO
REHO: A Decision Support Tool for Renewable Energy Communities - Published in JOSS (2024)
SLEPLET
SLEPLET: Slepian Scale-Discretised Wavelets in Python - Published in JOSS (2023)
OMG
OMG: A Scalable and Flexible Simulation and Testing Environment Toolbox for Intelligent Microgrid Control - Published in JOSS (2020)
dython: A Set of Analysis and Visualization Tools for Data and Variables in Python
dython: A Set of Analysis and Visualization Tools for Data and Variables in Python - Published in JOSS (2025)
Omniscape.jl
Omniscape.jl: Software to compute omnidirectional landscape connectivity - Published in JOSS (2021)
Re-Envisioning Numerical Information Field Theory (NIFTy.re)
Re-Envisioning Numerical Information Field Theory (NIFTy.re): A Library for Gaussian Processes and Variational Inference - Published in JOSS (2024)
filesstrings
filesstrings: An R package for file and string manipulation - Published in JOSS (2017)
DynamicalBilliards.jl
DynamicalBilliards.jl: An easy-to-use, modular and extendable Julia package for Dynamical Billiard systems in two dimensions. - Published in JOSS (2017)
MARTINI
MARTINI: Mock Array Radio Telescope Interferometry of the Neutral ISM - Published in JOSS (2024)
The MTPy software package for magnetotelluric data analysis and visualisation
The MTPy software package for magnetotelluric data analysis and visualisation - Published in JOSS (2019)
prysm
prysm: A Python optics module - Published in JOSS (2019)
Nkululeko 1.0: A Python package to predict speaker characteristics with a high-level interface
Nkululeko 1.0: A Python package to predict speaker characteristics with a high-level interface - Published in JOSS (2025)
opty
opty: Software for trajectory optimization and parameter identification using direct collocation - Published in JOSS (2018)
pyuvsim
pyuvsim: A comprehensive simulation package for radio interferometers in python. - Published in JOSS (2019)
GPCERF - An R package for implementing Gaussian processes for estimating causal exposure response curves
GPCERF - An R package for implementing Gaussian processes for estimating causal exposure response curves - Published in JOSS (2024)
A Python Library for Pre- and Post-Processing of DAMASK Simulations
A Python Library for Pre- and Post-Processing of DAMASK Simulations - Published in JOSS (2025)
UncertainSCI
UncertainSCI: A Python Package for Noninvasive Parametric Uncertainty Quantification of Simulation Pipelines - Published in JOSS (2023)
ArrowSpace: introducing Spectral Indexing for vector search
ArrowSpace: introducing Spectral Indexing for vector search - Published in JOSS (2025)
RiskPortfolios
RiskPortfolios: Computation of Risk-Based Portfolios in R - Published in JOSS (2017)
A Python package for homogenization procedures in fiber reinforced polymers
A Python package for homogenization procedures in fiber reinforced polymers - Published in JOSS (2023)
timeseriesflattener
timeseriesflattener: A Python package for summarizing features from (medical) time series - Published in JOSS (2023)
antimeridian
antimeridian: A Python package for correcting geometries that cross the 180th meridian - Published in JOSS (2025)
pyDeltaRCM
pyDeltaRCM: a flexible numerical delta model - Published in JOSS (2021)
PyVBMC
PyVBMC: Efficient Bayesian inference in Python - Published in JOSS (2023)
UM-Bridge
UM-Bridge: Uncertainty quantification and modeling bridge - Published in JOSS (2023)
cerf
cerf: A Python package to evaluate the feasibility and costs of power plant siting for alternative futures - Published in JOSS (2021)
CoReCon
CoReCon: an open, community-powered collection of Reionization constraints - Published in JOSS (2023)
pDEMtools
pDEMtools: conveniently search, download, and process ArcticDEM and REMA products - Published in JOSS (2024)
SolvationAnalysis
SolvationAnalysis: A Python toolkit for understanding liquid solvation structure in classical molecular dynamics simulations - Published in JOSS (2023)
elapid
elapid: Species distribution modeling tools for Python - Published in JOSS (2023)
ParMOO
ParMOO: A Python library for parallel multiobjective simulation optimization - Published in JOSS (2023)
Emiproc
Emiproc: A Python package for emission inventory processing - Published in JOSS (2025)
pyGCodeDecode
pyGCodeDecode: A Python package for time-accurate GCode simulation in material extrusion processes - Published in JOSS (2024)
osmapiR
osmapiR: An 'OpenStreetMap API' implementation for R - Published in JOSS (2024)
Foundry-ML - Software and Services to Simplify Access to Machine Learning Datasets in Materials Science
Foundry-ML - Software and Services to Simplify Access to Machine Learning Datasets in Materials Science - Published in JOSS (2024)
mutyper
mutyper: assigning and summarizing mutation types for analyzing germline mutation spectra - Published in JOSS (2023)
CGC
CGC: a Scalable Python Package for Co- and Tri-Clustering of Geodata Cubes - Published in JOSS (2022)
causal-curve
causal-curve: A Python Causal Inference Package to Estimate Causal Dose-Response Curves - Published in JOSS (2020)
pivmet
pivmet: an R package proposing pivotal methods for consensus clustering and mixture modelling - Published in JOSS (2024)
ijtiff
ijtiff: An R package providing TIFF I/O for ImageJ users - Published in JOSS (2018)
superblockify
superblockify: A Python Package for Automated Generation, Visualization, and Analysis of Potential Superblocks in Cities - Published in JOSS (2024)
BoARIO
BoARIO: A Python package implementing the ARIO indirect economic cost model - Published in JOSS (2024)
Empirical
Empirical: A scientific software library for research, education, and public engagement - Published in JOSS (2024)
VCFPy
VCFPy: a Python 3 library with good support for both reading and writing VCF - Published in JOSS (2016)
PyMSM
PyMSM: Python package for Competing Risks and Multi-State models for Survival Data - Published in JOSS (2022)
Underworld2
Underworld2: Python Geodynamics Modelling for Desktop, HPC and Cloud - Published in JOSS (2020)
caracas
caracas: Computer algebra in R - Published in JOSS (2021)