Updated 10 months ago

Piccolo • Rank 6.7 • Science 54%

A Julia package for solving quantum optimal control problems using direct trajectory optimization.

Updated 10 months ago

gostrocks • Rank 6.7 • Science 54%

Geospatial tools from the World Bank GOST team

Updated 10 months ago

genbank-to • Rank 6.7 • Science 54%

Convert genbank files to a swath of other formats

Updated 10 months ago

PowerSimulations.jl • Rank 14.7 • Science 46%

Julia for optimization simulation and modeling of PowerSystems. Part of the Scalable Integrated Infrastructure Planning Initiative at the National Renewable Energy Lab.

Updated 10 months ago

lme4 • Rank 24.7 • Science 36%

Mixed-effects models in R using S4 classes and methods with RcppEigen

Updated 10 months ago

ivy • Rank 6.7 • Science 54%

Course material on scientific software development for researchers in earth and planetary surface processes

Updated 10 months ago

@stdlib/blas-ext-base-sdsnansumpw • Rank 3.7 • Science 57%

Calculate the sum of single-precision floating-point strided array elements, ignoring NaN values and using pairwise summation with extended accumulation.

Updated 10 months ago

https://github.com/cbg-ethz/pangolin • Rank 3.7 • Science 57%

BSSE COVID-19 sequencing of test swab samples

Updated 10 months ago

@stdlib/random-streams-minstd • Rank 3.7 • Science 57%

Create a readable stream for a linear congruential pseudorandom number generator (LCG) based on Park and Miller.

Updated 10 months ago

https://github.com/cbg-ethz/lollipop • Rank 3.7 • Science 57%

Deconvolution for Wastewater Genomics

Updated 10 months ago

weighted-metapath2vec • Rank 3.7 • Science 57%

Weighted Metapath2Vec Graph Embedding

Scientific Software
Updated 10 months ago

ndbc-api — Peer-reviewed • Rank 11.7 • Science 49%

ndbc-api: Accelerating oceanography and climate science research with Python - Published in JOSS (2024)

Scientific Software · Peer-reviewed
Updated 10 months ago

adjustedCurves • Rank 11.7 • Science 49%

An R-Package to estimate and plot confounder-adjusted survival curves (single event survival data) and confounder-adjusted cumulative incidence functions (data with competing risks) using various methods.

Updated 10 months ago

@stdlib/blas-ext-base-ssort2hp • Rank 3.7 • Science 57%

Simultaneously sort two single-precision floating-point strided arrays based on the sort order of the first array using heapsort.

Updated 10 months ago

vivarium-public-health • Rank 14.7 • Science 46%

Vivarium microsimulation tools used to model diseases and interventions.

Updated 10 months ago

proteomicslfq • Rank 6.7 • Science 54%

Proteomics label-free quantification (LFQ) analysis pipeline

Updated 10 months ago

comtypes • Rank 24.7 • Science 36%

A pure Python, lightweight COM client and server framework, based on the ctypes Python FFI package.

Updated 10 months ago

tocer • Rank 16.6 • Science 44%

A command line interface for generating Markdown table of contents.

Updated 10 months ago

qgg • Rank 11.6 • Science 49%

Statistical tools for Quantitative Genetic Analyses

Updated 10 months ago

camtrapR • Rank 11.6 • Science 49%

R package for camera trap data management

Updated 10 months ago

@stdlib/stats-base-smeanpn • Rank 3.6 • Science 57%

Calculate the arithmetic mean of a single-precision floating-point strided array using a two-pass error correction algorithm.

Updated 10 months ago

@stdlib/stats-base-smeanwd • Rank 3.6 • Science 57%

Calculate the arithmetic mean of a single-precision floating-point strided array using Welford's algorithm.

Updated 10 months ago

@stdlib/stats-base-dsmeanpw • Rank 3.6 • Science 57%

Calculate the arithmetic mean of a single-precision floating-point strided array using pairwise summation with extended accumulation and returning an extended precision result.

Updated 10 months ago

@stdlib/stats-base-dsempn • Rank 3.6 • Science 57%

Calculate the standard error of the mean for a double-precision floating-point strided array using a two-pass algorithm.

Updated 10 months ago

rnaseq • Rank 11.6 • Science 49%

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Updated 10 months ago

censys • Rank 24.6 • Science 36%

An easy-to-use and lightweight API wrapper for Censys APIs.

Updated 10 months ago

pycldf • Rank 14.6 • Science 46%

python package to read and write CLDF datasets

Updated 10 months ago

@stdlib/stats-base-dsmeanwd • Rank 3.6 • Science 57%

Calculate the arithmetic mean of a single-precision floating-point strided array using Welford's algorithm with extended accumulation and returning an extended precision result.

Updated 10 months ago

@stdlib/stats-base-dstdevyc • Rank 3.6 • Science 57%

Calculate the standard deviation of a double-precision floating-point strided array using a one-pass algorithm proposed by Youngs and Cramer.

Updated 10 months ago

dist_cov • Rank 1.6 • Science 59%

conditional distributions with covariates

Updated 10 months ago

pymavlink • Rank 24.6 • Science 36%

python MAVLink interface and utilities

Updated 10 months ago

HYBRID • Rank 6.6 • Science 54%

HYBRID is a modeling toolset to assess the integration and economic viability of Integrated Energy Systems (IES).

Updated 10 months ago

wikibasemigrator • Rank 6.6 • Science 54%

A Python module to migrate entities from one Wikibase instance to another

Updated 10 months ago

gridmeta • Rank 6.6 • Science 54%

A repository for extracting dehydrated metadata for distribution power grid model.

Updated 10 months ago

@stdlib/stats-base-dsemtk • Rank 3.6 • Science 57%

Calculate the standard error of the mean for a double-precision floating-point strided array using a one-pass textbook algorithm.

Updated 10 months ago

vipera • Rank 3.6 • Science 57%

A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis

Updated 10 months ago

@stdlib/stats-base-dmeanwd • Rank 3.6 • Science 57%

Calculate the arithmetic mean of a double-precision floating-point strided array using Welford's algorithm.

Updated 10 months ago

spiR • Rank 3.6 • Science 57%

R package for the Social Progress Index

Updated 10 months ago

@stdlib/stats-base-dsnanmeanpn • Rank 3.6 • Science 57%

Calculate the arithmetic mean of a single-precision floating-point strided array, ignoring NaN values, using a two-pass error correction algorithm with extended accumulation, and returning an extended precision result.

Updated 10 months ago

PlutoReport • Rank 6.6 • Science 54%

Make awesome reports and talk slides in Pluto!

Updated 10 months ago

spynal • Rank 6.6 • Science 54%

Spynal: The Simple Python Neural Analysis Library. The backbone of your neural data analysis pipeline.

Updated 10 months ago

starvz • Rank 11.6 • Science 49%

R-based visualization techniques for the StarPU runtime

Updated 10 months ago

https://github.com/exalearn/colmena • Rank 14.6 • Science 46%

Library for steering campaigns of simulations on supercomputers

Updated 10 months ago

awesome-drug-discovery-knowledge-graphs • Rank 6.6 • Science 54%

A collection of research papers, datasets and software related to knowledge graphs for drug discovery. Accompanies the paper "A review of biomedical datasets relating to drug discovery: a knowledge graph perspective" (Briefings in Bioinformatics, 2022)

Updated 10 months ago

opennmt-py • Rank 24.6 • Science 36%

Open Source Neural Machine Translation and (Large) Language Models in PyTorch

Updated 10 months ago

basicvsr_plusplus • Rank 6.6 • Science 54%

Official repository of "BasicVSR++: Improving Video Super-Resolution with Enhanced Propagation and Alignment"

Updated 10 months ago

vimp • Rank 11.6 • Science 49%

Perform inference on algorithm-agnostic variable importance

Updated 10 months ago

@stdlib/stats-base-snanstdevtk • Rank 3.6 • Science 57%

Calculate the standard deviation of a single-precision floating-point strided array ignoring NaN values and using a one-pass textbook algorithm.

Updated 10 months ago

@stdlib/blas-ext-base-sdsapxsumpw • Rank 3.6 • Science 57%

Adds a constant to each single-precision floating-point strided array element and computes the sum using pairwise summation with extended accumulation.

Updated 10 months ago

osemosys_gnu_mathprog • Rank 6.6 • Science 54%

The GNU MathProg implementation of OSeMOSYS

Updated 10 months ago

wg-value • Rank 6.6 • Science 54%

CHAOSS Value Working Group

Updated 10 months ago

sequence-model • Rank 6.6 • Science 54%

Python version of the Steckler Sequence model

Updated 10 months ago

OpenSpecy • Rank 11.6 • Science 49%

Analyze, Process, Identify, and Share, Raman and (FT)IR Spectra

Updated 10 months ago

pyjac • Rank 9.6 • Science 51%

Creates C and CUDA analytical Jacobians for chemical kinetics ODE systems

Updated 10 months ago

oct-to-tiff • Rank 6.6 • Science 54%

A command line tool for converting optical coherence tomography angiography (OCTA) data.

Updated 10 months ago

mqt.predictor • Rank 11.5 • Science 49%

MQT Predictor - A Tool for Automatic Device Selection with Device-Specific Circuit Compilation for Quantum Computing

Updated 10 months ago

infomap • Rank 16.5 • Science 44%

Multi-level network clustering based on the Map Equation

Updated 10 months ago

@stdlib/blas-ext-base-dsort2hp • Rank 3.5 • Science 57%

Simultaneously sort two double-precision floating-point strided arrays based on the sort order of the first array using heapsort.

Updated 10 months ago

@stdlib/stats-base-dvarianceyc • Rank 3.5 • Science 57%

Calculate the variance of a double-precision floating-point strided array using a one-pass algorithm proposed by Youngs and Cramer.

Updated 10 months ago

modelicatableadditions • Rank 3.5 • Science 57%

📊 Extension of the CombiTable look-up table blocks of the Modelica Standard Library to additionally support cubic interpolation and reading of CSV, EPW (EnergyPlus Weather) and JSON files

Updated 10 months ago

@stdlib/stats-base-dnanvariancewd • Rank 3.5 • Science 57%

Calculate the variance of a double-precision floating-point strided array ignoring NaN values and using Welford's algorithm.

Updated 10 months ago

@stdlib/stats-base-svarianceyc • Rank 3.5 • Science 57%

Calculate the variance of a single-precision floating-point strided array using a one-pass algorithm proposed by Youngs and Cramer.

Updated 10 months ago

@stdlib/random-iter-improved-ziggurat • Rank 3.5 • Science 57%

Create an iterator for generating pseudorandom numbers drawn from a standard normal distribution using the Improved Ziggurat algorithm.

Updated 10 months ago

mfd • Rank 11.5 • Science 49%

:package: A Computation of Functional Spaces and Functional Diversity Indices

Updated 10 months ago

vision-transformers-cifar10 • Rank 6.5 • Science 54%

Let's train vision transformers (ViT) for cifar 10 / cifar 100!

Updated 10 months ago

CarlemanLinearization • Rank 6.5 • Science 54%

Carleman linearization for dynamical systems in Julia

Updated 10 months ago

PlotTools • Rank 11.5 • Science 49%

Tools for plotting with base R

Updated 10 months ago

geoserver • Rank 14.5 • Science 46%

Official GeoServer repository

Updated 10 months ago

soltrack • Rank 6.5 • Science 54%

The Python version of the SolTrack code to compute the position of and track the Sun.

Updated 10 months ago

symnum • Rank 6.5 • Science 54%

Symbolically construct NumPy functions and their derivatives

Updated 10 months ago

mikeio • Rank 16.5 • Science 44%

Read, write and manipulate dfs0, dfs1, dfs2, dfs3, dfsu and mesh files.

Updated 10 months ago

ctxR • Rank 11.5 • Science 49%

US EPA's ctxR: Utilities for Interacting with the CTX APIs in R without prior API knowledge https://www.epa.gov/comptox-tools/computational-toxicology-and-exposure-apis

Updated 10 months ago

uwlcm • Rank 6.5 • Science 54%

University of Warsaw Lagrangian Cloud Model

Updated 10 months ago

https://github.com/alan-turing-institute/neuro-ai-reading-group • Rank 3.5 • Science 57%

Space to collate materials related to the Neuroscience-AI reading group

Updated 10 months ago

@stdlib/stats-base-dnanmeanwd • Rank 3.5 • Science 57%

Calculate the arithmetic mean of a double-precision floating-point strided array, using Welford's algorithm and ignoring NaN values.

Updated 10 months ago

@stdlib/stats-base-dmeanlipw • Rank 3.5 • Science 57%

Calculate the arithmetic mean of a double-precision floating-point strided array using a one-pass trial mean algorithm with pairwise summation.

Updated 10 months ago

plantuml-examples • Rank 6.5 • Science 54%

PlantUML eaxmples for UML, ERD, wireframes, mind maps, JSON, YAML, WBS, ASCII art, Gantt charts, C4 models, and more

Updated 10 months ago

zigma • Rank 6.5 • Science 54%

A PyTorch implementation of the paper "ZigMa: A DiT-Style Mamba-based Diffusion Model" (ECCV 2024)

Updated 10 months ago

neuropythy • Rank 14.4 • Science 46%

A neuroscience library for Python, intended to complement the existing nibabel library.

Updated 10 months ago

https://github.com/arm-doe/arm-test-data • Rank 11.4 • Science 49%

Test data for the atmospheric data community toolkit (ACT)

Updated 10 months ago

r-hrbrthemes • Rank 11.4 • Science 49%

:lock_with_ink_pen: Opinionated, typographic-centric ggplot2 themes and theme components

Updated 10 months ago

bdc • Rank 11.4 • Science 49%

Check out the vignettes with detailed documentation on each module of the bdc package