ngl_tools
A collection of tools developed by the Next Generation Liquefaction modelers.
https://github.com/coinfabrik/geppetto
Geppetto: Advanced Slack bot using multiple AI models for interactive conversations and creative image generation. Enhances Slack with automated responses and intelligent dialogues, supporting flexible model management and Docker deployment.
django-ninja-crudl
The easiest, quickest and most complete way to publish REST API with Create, Read, Update, Delete and List endpoints from Django models.
glamod-marine-processing
Code and configuration for GLAMOD marine data processing
w2dynamics
A continuous-time hybridization-expansion Monte Carlo code for calculating n-particle Green's functions of the Anderson impurity model and within dynamical mean-field theory.
transport_network_construct
A python toolbox to construct hybrid transport network with topology and perform graph query
https://github.com/cadquery/pywrap
C++ binding generator based on libclang and pybind11
https://github.com/devidw/coverimagegenerator
Generate Cover Images for your blog articles
spack
A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
speclet
A Bayesian hierarchical model to discover tissue-specific cancer driver genes and synthetic lethal interactions from CRISPR/Cas9 LoF screens.
figuratenum
Figuratenum is the most comprehensive Python library for figurate numbers, capable of generating up to 233 different sequences across various dimensions and generalizations. Based on the book ‘Figurate Numbers’ (2012) by Elena Deza and Michel Deza.
python_to_grbl
A simple open-source python 🐍 to grbl 🤖 sender || Controlling 3-axis GRBL/CNC/gcode machines with python over a serial/usb connection that waits for completion of movement before sending the next command
https://github.com/acdh-oeaw/transkribus2arche
Scripts and utility functions to ingest Transkribus Data into ARCHE
rapidx
A toolbox that integrates with PyTorch-Lightning which helps in running and managing multiple codebases
radarpipeline
A python feature generation and visualzation package use with RADAR project data.
ganx
The GitHub repository for the Python package ganX - generate artificially new XRF
pytximport
Feature-rich Python implementation of the tximport package for gene count estimation.
stsci-package-template
A package template for STScI Open Source software projects
stats-biogeo-2021
Extracting and processing data from MIT's Darwin model, and applying statistical learning methods. In support of submitted manuscript.
many-types-4-py-dataset
ManyTypes4Py: A benchmark Python dataset for machine learning-based type inference
https://github.com/becksteinlab/gromacswrapper.analysis
Legacy code from GromacsWrapper: gromacs.analysis module
wolfsoftware.get-aws-regions
A package for retrieving a list of available regions from AWS.
https://github.com/bbquercus/deepblink
Threshold independent detection and localization of diffraction-limited spots.
https://github.com/aramis-lab/clinica_pipeline_noddi
NODDI pipeline used for [Wen et al., 2018]
ua-opc-interface
This UA OPC Interface is a Python-based application that provides a versatile and user-friendly interface for controlling laboratory pumps via OPC UA protocol. This application is specifically tailored for such applications, allowing users to automate and monitor the operation of pumps with ease and accuracy.
gempy
GemPy is an open-source, Python-based 3-D structural geological modeling software, which allows the implicit (i.e. automatic) creation of complex geological models from interface and orientation data. It also offers support for stochastic modeling to address parameter and model uncertainties.
unitary
API library providing common operations for adding quantum behaviors to games.
https://github.com/amr-yasser226/deep-dive-python
A personal record of Python concepts I explore — from everyday features to advanced techniques. Includes examples, explanations, and deep dives into the language’s inner workings.
https://github.com/beatawereszczynska/k-space_masking_for_mri_denoising
Graduate k-space masking for MRI image denoising and blurring (on the example of Agilent FID data). (Python 3)
comparative-embedding-visualization
A Jupyter widget for comparing two embeddings with shared labels by their confusion, neighborhoods, and size.
grids
A python tool for extracting time series subsets of n-dimensional spatiotemporal arrays
scanexitronlr
A package for the characterization and quantification of exitron splicing events in long-read RNA-seq
https://github.com/cea-metrocarac/pysspfm
PySSPFM: A specialized tool for Switching Spectroscopy Piezoresponse Force Microscopy (SSPFM) data processing
https://github.com/cemac/stormtrackingscripts
THIS REPO IS ARCHIVED. Development of Scripts from ICAS dynamics group
opendata_sandbox
This repository contains the code for the manuscript Ensemble-labeling of infectious diseases time series to evaluate early warning systems with which you can reproduce the manuscript's results and figures.
2022-01-18-cardiff-online
Shell, Git, Plotting and Programming in Python (Cardiff, January 2022)
https://github.com/andleb/aoc18
Advent of Code 2018 solutions to all problems - actual competition code.
tracklab
A Modular End-to-End Tracking Framework for Research and Development 🎯🔬
conveyorvision-bag-counter
ConveyorVision is an innovative real-time system designed to automate the counting and tracking of cement bags on conveyor belts. Utilizing cutting-edge deep learning techniques like YOLOv8 for object detection and Byte tracker for precise tracking, ConveyorVision accurately monitors cement bags as they traverse the conveyor belt.
pharmacovigilance-literature-mining
Co-occurrence analysis in pubmed and faers of two lists of terms.
sonnet-automation-code
Tools designed to extract Resonant Frequency & Coupling Quality Factor for Microwave Kinetic Inductance Detector Simulations using a Sonnet .csv data file.
uyghur-multi-script-converter
This converter converts multiple Uyghur scripts: ULS(Uyghur Latin Script), UAS(Uyghur Arabic Script), CTS(Common Turkick Scritp), UCS(Uyghur Cyrilik Script) and Uyghur Yengi (new) Script.
algepy-tools
A Python library for efficient number theory and abstract algebra.
reinforcement_learning_ev3_framework_student
[student version] lecturer data for the EV3 python reinforcement learning framework with pygame
solcore5
A multi-scale, python-based library for the modelling of solar cells and semiconductor materials
https://github.com/dmdequin/msisdn-app-api
A web API in Python using Django with a basic front end where users can search the database. The project was done using DevOps tools and methodologies.
dirschema
Spec and validator for directories, files and metadata based on JSON Schema and regexes.
cap
HPC workflow that automates the tedious actions of compiling, analyzing, and parsing with bincfg
SpectriPy
SpectriPy: Enhancing Cross-Language Mass Spectrometry Data Analysis with R and Python - Published in JOSS (2025)
csv2ical
A CLI tool that converts a CSV file with event details into an iCalendar ICS file. The ICS file can then be imported into apps like Google Calendar, Microsoft Outlook, Apple macOS Calendar and etc.
qst
A public Python package to perform quantum state tomography through maximum likelihood estmation
altify-developing-main
All of my hacking tools that are available for free to the public - 200+ hacking tools all opensource also 10,500 COMMITS!!!
dibs
DIBS is an implementation of a basic controlled digital lending (CDL) system using IIIF to make scanned books available for time-limited viewing.
swisscourtrulingcorpus
The Swiss Court Ruling Corpus (SCRC) contains code for extracting information from Swiss court rulings
annotest
A tool to automatically generating bug-finding inputs for neural network program testing.
atacseq_pipeline
Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.
https://github.com/atharvapathak/telecom_churn_case_study
Build a classification model for reducing the churn rate for a telecom company
https://github.com/atharvapathak/market_basket_analysis
This project implements Market Basket Analysis (MBA), using data mining techniques to uncover relationships between products purchased together. By analyzing transaction data, we aim to provide actionable insights to optimize marketing strategies and enhance customer experience.
deepfastvision
A Python library for rapid prototyping of deep transfer learning vision models.
https://github.com/atharvapathak/sales_forecasting_project
Forecasted product sales using time series models such as Holt-Winters, SARIMA and causal methods, e.g. Regression. Evaluated performance of models using forecasting metrics such as, MAE, RMSE, MAPE and concluded that Linear Regression model produced the best MAPE in comparison to other models