AdaptiveResonance.jl
AdaptiveResonance.jl: A Julia Implementation of Adaptive Resonance Theory (ART) Algorithms - Published in JOSS (2022)
Scanbot
Scanbot: An STM Automation Bot - Published in JOSS (2024)
Automatic Computation for Robot Design (ACRoD)
Automatic Computation for Robot Design (ACRoD): A Python package for numerical calculation of Jacobian of a robot at a given configuration around a specified end-effector point - Published in JOSS (2024)
WrightTools
WrightTools: a Python package for multidimensional spectroscopy - Published in JOSS (2019)
PyPVRPM
PyPVRPM: Photovoltaic Reliability and Performance Model in Python - Published in JOSS (2022)
villager
villager: A framework for designing and executing agent-based models in R - Published in JOSS (2022)
Python class defining a machine learning dataset ensuring key-based correspondence and maintaining integrity
Python class defining a machine learning dataset ensuring key-based correspondence and maintaining integrity - Published in JOSS (2017)
FrESCO
FrESCO: Framework for Exploring Scalable Computational Oncology - Published in JOSS (2023)
CRATE
CRATE: A Python package to perform fast material simulations - Published in JOSS (2023)
PICOS
PICOS: A Python interface to conic optimization solvers - Published in JOSS (2022)
MOTrainer
MOTrainer: Distributed Measurement Operator Trainer for Data Assimilation Applications - Published in JOSS (2024)
Abil: A Python package for the interpolation of aquatic biogeochemical datasets
Abil: A Python package for the interpolation of aquatic biogeochemical datasets - Published in JOSS (2025)
fseval
fseval: A Benchmarking Framework for Feature Selection and Feature Ranking Algorithms - Published in JOSS (2022)
$hp\mathrm{3D}$
$hp\mathrm{3D}$: A Scalable MPI/OpenMP $hp$-Adaptive Finite Element Software Library for Complex Multiphysics Applications - Published in JOSS (2024)
qiskit
Qiskit is an open-source SDK for working with quantum computers at the level of extended quantum circuits, operators, and primitives.
musclesyneRgies
musclesyneRgies: factorization of electromyographic data in R with sensible defaults - Published in JOSS (2022)
kallisto
kallisto: A command-line interface to simplify computational modelling and the generation of atomic features - Published in JOSS (2021)
DBMS-Benchmarker
DBMS-Benchmarker: Benchmark and Evaluate DBMS in Python - Published in JOSS (2022)
Caliban
Caliban: Docker-based job manager for reproducible workflows - Published in JOSS (2020)
PyUnfold
PyUnfold: A Python package for iterative unfolding - Published in JOSS (2018)
NERD
NERD: Numerical Estimation of Rodenticide Density - Published in JOSS (2025)
NebulaSEM
NebulaSEM: A high-order discontinuous Galerkin spectral element code for atmospheric modeling - Published in JOSS (2024)
AltaiPony - Flare science in Kepler, K2 and TESS light curves
AltaiPony - Flare science in Kepler, K2 and TESS light curves - Published in JOSS (2021)
biorbd
biorbd: A C++, Python and MATLAB library to analyze and simulate the human body biomechanics - Published in JOSS (2021)
OpenHPS
OpenHPS: A Modular Framework to Facilitate the Development of FAIR Positioning Systems - Published in JOSS (2025)
lfda
lfda: Local Fisher Discriminant Analysis in R - Published in JOSS (2019)
Chips-n-Salsa
Chips-n-Salsa: A Java Library of Customizable, Hybridizable, Iterative, Parallel, Stochastic, and Self-Adaptive Local Search Algorithms - Published in JOSS (2020)
calorine
calorine: A Python package for constructing and sampling neuroevolution potential models - Published in JOSS (2024)
W2W
W2W: A Python package that injects WUDAPT's Local Climate Zone information in WRF - Published in JOSS (2022)
MPTRAC
MPTRAC: A high-performance Lagrangian transport model for atmospheric air parcel dispersion - Published in JOSS (2025)
giotto-deep
giotto-deep: A Python Package for Topological Deep Learning - Published in JOSS (2022)
univariateML
univariateML: An R package for maximum likelihood estimation of univariate densities - Published in JOSS (2019)
pytreegrav
pytreegrav: A fast Python gravity solver - Published in JOSS (2021)
APCtools
APCtools: Descriptive and Model-based Age-Period-Cohort Analysis - Published in JOSS (2022)
universalmotif
universalmotif: An R package for biological motif analysis - Published in JOSS (2024)
rbmi
rbmi: A R package for standard and reference-based multiple imputation methods - Published in JOSS (2022)
SLIX
SLIX: A Python package for fully automated evaluation of Scattered Light Imaging measurements on brain tissue - Published in JOSS (2020)
stabm
stabm: Stability Measures for Feature Selection - Published in JOSS (2021)
Model dispersion with PRISM; an alternative to MCMC for rapid analysis of models
Model dispersion with PRISM; an alternative to MCMC for rapid analysis of models - Published in JOSS (2019)
DIRECT
DIRECT: Deep Image REConstruction Toolkit - Published in JOSS (2022)
Pycrostates
Pycrostates: a Python library to study EEG microstates - Published in JOSS (2022)
IonDiff
IonDiff: command-line tool to identify ionic diffusion events and hopping correlations in molecular dynamics simulations - Published in JOSS (2024)
funsies
funsies: A minimalist, distributed and dynamic workflow engine - Published in JOSS (2021)
SMITE
SMITE: Single Molecule Imaging Toolbox Extraordinaire (MATLAB) - Published in JOSS (2023)
AltamISA
AltamISA: a Python API for ISA-Tab files - Published in JOSS (2019)
OpenCMP
OpenCMP: An Open-Source Computational Multiphysics Package - Published in JOSS (2022)
ospgrillage
ospgrillage: A bridge deck grillage analysis preprocessor for OpenSeesPy - Published in JOSS (2022)
BlackBIRDS
BlackBIRDS: Black-Box Inference foR Differentiable Simulators - Published in JOSS (2023)
Openseize
Openseize: A digital signal processing package for large EEG datasets in Python - Published in JOSS (2023)
BetaML
BetaML: The Beta Machine Learning Toolkit, a self-contained repository of Machine Learning algorithms in Julia - Published in JOSS (2021)
pymcmcstat
pymcmcstat: A Python Package for Bayesian Inference Using Delayed Rejection Adaptive Metropolis - Published in JOSS (2019)
HRV
HRV: a Pythonic package for Heart Rate Variability Analysis - Published in JOSS (2020)
pvOps
pvOps: a Python package for empirical analysis of photovoltaic field data - Published in JOSS (2023)
TensorFlow.jl
TensorFlow.jl: An Idiomatic Julia Front End for TensorFlow - Published in JOSS (2018)
Multi-view-AE
Multi-view-AE: A Python package for multi-view autoencoder models - Published in JOSS (2023)
alignparse
alignparse: A Python package for parsing complex features from high-throughput long-read sequencing - Published in JOSS (2019)
PyPO
PyPO: a Python package for Physical Optics - Published in JOSS (2023)
FlowSieve
FlowSieve: A Coarse-Graining Utility for Geophysical Flows on the Sphere - Published in JOSS (2023)
Virtual Scanner
Virtual Scanner: MRI on a Browser - Published in JOSS (2019)
polyCub
polyCub: An R package for Integration over Polygons - Published in JOSS (2019)
Variational Solvers for Irreversible Evolutionary Systems
Variational Solvers for Irreversible Evolutionary Systems - Published in JOSS (2024)
Viash
Viash: A meta-framework for building reusable workflow modules - Published in JOSS (2024)
PyTASER
PyTASER: Simulating transient absorption spectroscopy (TAS) for crystals from first principles - Published in JOSS (2024)
elmada
elmada: Dynamic electricity carbon emission factors and prices for Europe - Published in JOSS (2021)
individual
individual: An R package for individual-based epidemiological models - Published in JOSS (2021)
workloopR
workloopR: Analysis of work loops and other data from muscle physiology experiments in R - Published in JOSS (2019)
UKCensusAPI
UKCensusAPI: python and R interfaces to the nomisweb UK census data API - Published in JOSS (2017)
Mordecai
Mordecai: Full Text Geoparsing and Event Geocoding - Published in JOSS (2017)
Distant Viewing Toolkit
Distant Viewing Toolkit: A Python Package for the Analysis of Visual Culture - Published in JOSS (2020)
PySwarming
PySwarming: a research toolkit for Swarm Robotics - Published in JOSS (2023)
UltraDark.jl
UltraDark.jl: A Julia package for simulation of cosmological scalar fields - Published in JOSS (2024)
madupite
madupite: A High-Performance Distributed Solver for Large-Scale Markov Decision Processes - Published in JOSS (2025)
bmgarch
bmgarch: An R-Package for Bayesian Multivariate GARCH models - Published in JOSS (2021)
dml
dml: Distance Metric Learning in R - Published in JOSS (2018)
TensorInference
TensorInference: A Julia package for tensor-based probabilistic inference - Published in JOSS (2023)
PhaseTypeR
PhaseTypeR: an R package for phase-type distributions in population genetics - Published in JOSS (2023)
MicrobiomeR
MicrobiomeR: An R Package for Simplified and Standardized Microbiome Analysis Workflows - Published in JOSS (2019)
A C++ Implementation of a Cartesian Impedance Controller for Robotic Manipulators
A C++ Implementation of a Cartesian Impedance Controller for Robotic Manipulators - Published in JOSS (2024)
pySYD
pySYD: Automated measurements of global asteroseismic parameters - Published in JOSS (2022)
rigr
rigr: Regression, Inference, and General Data Analysis Tools in R - Published in JOSS (2022)
CMakePPLang
CMakePPLang: An object-oriented extension to CMake - Published in JOSS (2023)
gospl
gospl: Global Scalable Paleo Landscape Evolution - Published in JOSS (2020)
Arabica
Arabica: A Python package for exploratory analysis of text data - Published in JOSS (2024)
Application Skeleton
Application Skeleton: Generating Synthetic Applications for Infrastructure Research - Published in JOSS (2016)
policytree
policytree: Policy learning via doubly robust empirical welfare maximization over trees - Published in JOSS (2020)
Segmenteverygrain
Segmenteverygrain: A Python module for segmentation of grains in images - Published in JOSS (2025)
PyStokes
PyStokes: phoresis and Stokesian hydrodynamics in Python - Published in JOSS (2020)
GeneScape
GeneScape: A Python package for gene ontology visualization - Published in JOSS (2024)
RSMTool
RSMTool: collection of tools building and evaluating automated scoring models - Published in JOSS (2016)
OptiCommPy
OptiCommPy: Open-source Simulation of Fiber Optic Communications with Python - Published in JOSS (2024)
RidePy
RidePy: A fast and modular framework for simulating ridepooling systems - Published in JOSS (2024)
BiRank
BiRank: Fast and Flexible Ranking on Bipartite Networks with R and Python - Published in JOSS (2020)