slurmR — Peer-reviewed • Rank 11.4 • Science 96%

slurmR: A lightweight wrapper for HPC with Slurm - Published in JOSS (2021)

IWOPY — Peer-reviewed • Rank 7.4 • Science 100%

IWOPY: Fraunhofer IWES optimization tools in Python - Published in JOSS (2024)

Starmatrix — Peer-reviewed • Rank 7.4 • Science 100%

Starmatrix: Modelling nucleosynthesis of galactic chemical elements - Published in JOSS (2022)

tell — Peer-reviewed • Rank 9.3 • Science 98%

tell: a Python package to model future total electricity loads in the United States - Published in JOSS (2022)

Reducing the efforts to create reproducible analysis code with FieldTrip — Peer-reviewed • Rank 12.3 • Science 95%

Reducing the efforts to create reproducible analysis code with FieldTrip - Published in JOSS (2024)

bcdata — Peer-reviewed • Rank 14.3 • Science 93%

bcdata: An R package for searching & retrieving data from the B.C. Data Catalogue - Published in JOSS (2021)

pyomeca — Peer-reviewed • Rank 12.3 • Science 95%

pyomeca: An Open-Source Framework for Biomechanical Analysis - Published in JOSS (2020)

FEM_2D — Peer-reviewed • Rank 12.3 • Science 95%

FEM_2D: A Rust Package for 2D Finite Element Method Computations with Extensive Support for hp-refinement - Published in JOSS (2023)

AixCaliBuHA — Peer-reviewed • Rank 9.3 • Science 98%

AixCaliBuHA: Automated calibration of building and HVAC systems - Published in JOSS (2022)

sparse-lm — Peer-reviewed • Rank 9.3 • Science 98%

sparse-lm: Sparse linear regression models in Python - Published in JOSS (2023)

Melodie — Peer-reviewed • Rank 9.3 • Science 98%

Melodie: Agent-based Modeling in Python - Published in JOSS (2023)

GNS — Peer-reviewed • Rank 7.3 • Science 100%

GNS: A generalizable Graph Neural Network-based simulator for particulate and fluid modeling - Published in JOSS (2023)

SummationByPartsOperators.jl — Peer-reviewed • Rank 7.3 • Science 100%

SummationByPartsOperators.jl: A Julia library of provably stable discretization techniques with mimetic properties - Published in JOSS (2021)

KerrGeoPy — Peer-reviewed • Rank 7.3 • Science 100%

KerrGeoPy: A Python Package for Computing Timelike Geodesics in Kerr Spacetime - Published in JOSS (2024)

OMEGA-Py — Peer-reviewed • Rank 7.3 • Science 100%

OMEGA-Py: Python Tools for OMEGA Data - Published in JOSS (2024)

nrt — Peer-reviewed • Rank 9.3 • Science 98%

nrt: operational monitoring of satellite image time-series in Python - Published in JOSS (2024)

Acanthophis — Peer-reviewed • Rank 9.3 • Science 98%

Acanthophis: a comprehensive plant hologenomics pipeline - Published in JOSS (2024)

GXBeam — Peer-reviewed • Rank 9.3 • Science 98%

GXBeam: A Pure Julia Implementation of Geometrically Exact Beam Theory - Published in JOSS (2022)

open_iA — Peer-reviewed • Rank 7.3 • Science 100%

open_iA: A tool for processing and visual analysis of industrial computed tomography datasets - Published in JOSS (2019)

Enabling the Verification and Formalization of Hybrid Quantum-Classical Computing with OpenQASM 3.0 compatible QASM-TS 2.0 • Rank 7.3 • Science 100%

Enabling the Verification and Formalization of Hybrid Quantum-Classical Computing with OpenQASM 3.0 compatible QASM-TS 2.0 - Published in JOSS (2025)

ndsplines — Peer-reviewed • Rank 14.2 • Science 93%

ndsplines: A Python Library for Tensor-Product B-Splines of Arbitrary Dimension - Published in JOSS (2019)

The Basic Model Interface 2.0 — Peer-reviewed • Rank 7.2 • Science 100%

The Basic Model Interface 2.0: A standard interface for coupling numerical models in the geosciences - Published in JOSS (2020)

scikit-eo — Peer-reviewed • Rank 12.2 • Science 95%

scikit-eo: A Python package for Remote Sensing Data Analysis - Published in JOSS (2024)

pyneqsys — Peer-reviewed • Rank 14.2 • Science 93%

pyneqsys: Solve symbolically defined systems of non-linear equations numerically - Published in JOSS (2018)

StreamGen — Peer-reviewed • Rank 9.2 • Science 98%

StreamGen: a Python framework for generating streams of labeled data - Published in JOSS (2024)

CoastSeg — Peer-reviewed • Rank 12.2 • Science 95%

CoastSeg: an accessible and extendable hub for satellite-derived-shoreline (SDS) detection and mapping - Published in JOSS (2024)

FitSNAP — Peer-reviewed • Rank 12.2 • Science 95%

FitSNAP: Atomistic machine learning with LAMMPS - Published in JOSS (2023)

Pybehave — Peer-reviewed • Rank 7.2 • Science 100%

Pybehave: a hardware agnostic, Python-based framework for controlling behavioral neuroscience experiments - Published in JOSS (2024)

Seaduck — Peer-reviewed • Rank 12.2 • Science 95%

Seaduck: A python package for Eulerian and Lagrangian interpolation on ocean datasets - Published in JOSS (2023)

scholarly • Rank 30.2 • Science 77%

Retrieve author and publication information from Google Scholar in a friendly, Pythonic way without having to worry about CAPTCHAs!

TRUNAJOD — Peer-reviewed • Rank 12.2 • Science 95%

TRUNAJOD: A text complexity library to enhance natural language processing - Published in JOSS (2021)

PyOrthanc — Peer-reviewed • Rank 14.2 • Science 93%

PyOrthanc: A Python Interface for Orthanc DICOM Servers - Published in JOSS (2025)

PyFstat — Peer-reviewed • Rank 12.2 • Science 95%

PyFstat: a Python package for continuous gravitational-wave data analysis - Published in JOSS (2021)

Kinetic.jl — Peer-reviewed • Rank 7.2 • Science 100%

Kinetic.jl: A portable finite volume toolbox for scientific and neural computing - Published in JOSS (2021)

unifir — Peer-reviewed • Rank 9.2 • Science 98%

unifir: A Unifying API for Working with Unity in R - Published in JOSS (2022)

TopoPyScale — Peer-reviewed • Rank 12.2 • Science 95%

TopoPyScale: A Python Package for Hillslope Climate Downscaling - Published in JOSS (2023)

PeleLMeX — Peer-reviewed • Rank 7.2 • Science 100%

PeleLMeX: an AMR Low Mach Number Reactive Flow Simulation Code without level sub-cycling - Published in JOSS (2023)

Pycashier — Peer-reviewed • Rank 7.2 • Science 100%

Pycashier: cash in on DNA barcode tags - Published in JOSS (2024)

CR-Sparse — Peer-reviewed • Rank 9.2 • Science 98%

CR-Sparse: Hardware accelerated functional algorithms for sparse signal processing in Python using JAX - Published in JOSS (2021)

Plonk — Peer-reviewed • Rank 9.2 • Science 98%

Plonk: Smoothed particle hydrodynamics analysis and visualization with Python - Published in JOSS (2019)

libfmp — Peer-reviewed • Rank 14.1 • Science 93%

libfmp: A Python Package for Fundamentals of Music Processing - Published in JOSS (2021)

PyUoI — Peer-reviewed • Rank 9.1 • Science 98%

PyUoI: The Union of Intersections Framework in Python - Published in JOSS (2019)

GGLasso - a Python package for General Graphical Lasso computation — Peer-reviewed • Rank 12.1 • Science 95%

GGLasso - a Python package for General Graphical Lasso computation - Published in JOSS (2021)

cortecs — Peer-reviewed • Rank 7.1 • Science 100%

cortecs: A Python package for compressing opacities - Published in JOSS (2024)

Quail — Peer-reviewed • Rank 12.1 • Science 95%

Quail: A Python toolbox for analyzing and plotting free recall data - Published in JOSS (2017)

Dnaapler — Peer-reviewed • Rank 12.1 • Science 95%

Dnaapler: A tool to reorient circular microbial genomes - Published in JOSS (2024)

kalepy — Peer-reviewed • Rank 12.1 • Science 95%

kalepy: a Python package for kernel density estimation, sampling and plotting - Published in JOSS (2021)

portalr — Peer-reviewed • Rank 12.1 • Science 95%

portalr: an R package for summarizing and using the Portal Project Data - Published in JOSS (2019)

`SimilaritySearch.jl` — Peer-reviewed • Rank 9.1 • Science 98%

`SimilaritySearch.jl`: Autotuned nearest neighbor indexes for Julia - Published in JOSS (2022)

ESAT — Peer-reviewed • Rank 9.1 • Science 98%

ESAT: Environmental Source Apportionment Toolkit Python package - Published in JOSS (2024)

nleis.py — Peer-reviewed • Rank 7.1 • Science 100%

nleis.py: A Nonlinear Electrochemical Impedance Analysis Toolbox - Published in JOSS (2025)

geostan — Peer-reviewed • Rank 12.1 • Science 95%

geostan: An R package for Bayesian spatial analysis - Published in JOSS (2022)

Neurosift — Peer-reviewed • Rank 9.1 • Science 98%

Neurosift: DANDI exploration and NWB visualization in the browser - Published in JOSS (2024)

HallThruster.jl — Peer-reviewed • Rank 7.0 • Science 100%

HallThruster.jl: a Julia package for 1D Hall thruster discharge simulation - Published in JOSS (2023)

ARDL — Peer-reviewed • Rank 14.0 • Science 93%

ARDL: An R package for the analysis of level relationships - Published in JOSS (2022)

rucrdtw — Peer-reviewed • Rank 14.0 • Science 93%

rucrdtw: Fast time series subsequence search in R - Published in JOSS (2016)

The psycho Package — Peer-reviewed • Rank 14.0 • Science 93%

The psycho Package: an Efficient and Publishing-Oriented Workflow for Psychological Science - Published in JOSS (2018)

SLAM Toolbox — Peer-reviewed • Rank 12.0 • Science 95%

SLAM Toolbox: SLAM for the dynamic world - Published in JOSS (2021)

thurstonianIRT — Peer-reviewed • Rank 12.0 • Science 95%

thurstonianIRT: Thurstonian IRT Models in R - Published in JOSS (2019)

ugv_nav4d — Peer-reviewed • Rank 7.0 • Science 100%

ugv_nav4d: Advanced Multi-Surface Navigation for Unmanned Ground Vehicles Using 4D Path Planning Techniques - Published in JOSS (2024)

numpy • Rank 40.0 • Science 67%

The fundamental package for scientific computing with Python.

omock • Rank 11.9 • Science 95%

overviewR - Easily Explore Your Data in R — Peer-reviewed • Rank 11.9 • Science 95%

overviewR - Easily Explore Your Data in R - Published in JOSS (2022)

pocoMC — Peer-reviewed • Rank 11.9 • Science 95%

pocoMC: A Python package for accelerated Bayesian inference in astronomy and cosmology - Published in JOSS (2022)

riccati — Peer-reviewed • Rank 6.9 • Science 100%

riccati: an adaptive, spectral solver for oscillatory ODEs - Published in JOSS (2023)

hillR — Peer-reviewed • Rank 11.9 • Science 95%

hillR: taxonomic, functional, and phylogenetic diversity and similarity through Hill Numbers - Published in JOSS (2018)

PyNumDiff — Peer-reviewed • Rank 6.9 • Science 100%

PyNumDiff: A Python package for numerical differentiation of noisy time-series data - Published in JOSS (2022)

Fruitbat — Peer-reviewed • Rank 6.9 • Science 100%

Fruitbat: A Python Package for Estimating Redshifts of Fast Radio Bursts - Published in JOSS (2019)

DisCoTec — Peer-reviewed • Rank 6.9 • Science 100%

DisCoTec: Distributed higher-dimensional HPC simulations with the sparse grid combination technique - Published in JOSS (2025)

tidyfst — Peer-reviewed • Rank 13.9 • Science 93%

tidyfst: Tidy Verbs for Fast Data Manipulation - Published in JOSS (2020)

ChainoPy — Peer-reviewed • Rank 8.9 • Science 98%

ChainoPy: A Python Library for Discrete Time Markov Chain Based Stochastic Analysis - Published in JOSS (2024)

dwctaxon, an R package for editing and validating taxonomic data in Darwin Core format — Peer-reviewed • Rank 8.9 • Science 98%

dwctaxon, an R package for editing and validating taxonomic data in Darwin Core format - Published in JOSS (2024)

seesus — Peer-reviewed • Rank 6.9 • Science 100%

seesus: a social, environmental, and economic sustainability classifier for Python - Published in JOSS (2024)

mei-friend — Peer-reviewed • Rank 6.9 • Science 100%

mei-friend: An Interactive Web-based Editor for Digital Music Encodings - Published in JOSS (2024)

spiro — Peer-reviewed • Rank 8.8 • Science 98%

spiro: An R package for analyzing data from cardiopulmonary exercise testing - Published in JOSS (2023)

The sspm R package for spatially-explicit surplus production population models — Peer-reviewed • Rank 8.8 • Science 98%

The sspm R package for spatially-explicit surplus production population models - Published in JOSS (2023)

tomso — Peer-reviewed • Rank 6.8 • Science 100%

tomso: TOols for Models of Stars and their Oscillations - Published in JOSS (2022)

NcCut — Peer-reviewed • Rank 6.8 • Science 100%

NcCut: A NetCDF Viewer and Transecting Tool - Published in JOSS (2025)

MetSim — Peer-reviewed • Rank 11.8 • Science 95%

MetSim: A Python package for estimation and disaggregation of meteorological data - Published in JOSS (2020)

greeks — Peer-reviewed • Rank 13.8 • Science 93%

greeks: Sensitivities of Prices of Financial Options and Implied Volatilities - Published in JOSS (2024)

The Vascular Modeling Toolkit — Peer-reviewed • Rank 11.8 • Science 95%

The Vascular Modeling Toolkit: A Python Library for the Analysis of Tubular Structures in Medical Images - Published in JOSS (2018)

GrainLearning — Peer-reviewed • Rank 8.8 • Science 98%

GrainLearning: A Bayesian uncertainty quantification toolbox for discrete and continuum numerical models of granular materials - Published in JOSS (2024)

Ripserer.jl — Peer-reviewed • Rank 8.7 • Science 98%

Ripserer.jl: flexible and efficient persistent homology computation in Julia - Published in JOSS (2020)

Microbiome.jl and BiobakeryUtils.jl - Julia packages for working with microbial community data — Peer-reviewed • Rank 8.7 • Science 98%

Microbiome.jl and BiobakeryUtils.jl - Julia packages for working with microbial community data - Published in JOSS (2021)

RAMP — Peer-reviewed • Rank 11.7 • Science 95%

RAMP: stochastic simulation of user-driven energy demand time series - Published in JOSS (2024)

EmissV — Peer-reviewed • Rank 11.7 • Science 95%

EmissV: an R package to create vehicular and other emissions for air quality models - Published in JOSS (2018)

HOHQMesh — Peer-reviewed • Rank 6.7 • Science 100%

HOHQMesh: An All Quadrilateral/Hexahedral Unstructured Mesh Generator for High Order Elements - Published in JOSS (2024)

nequip • Rank 21.7 • Science 85%

NequIP is a code for building E(3)-equivariant interatomic potentials

QSOnic — Peer-reviewed • Rank 6.7 • Science 100%

QSOnic: fast quasar continuum fitting - Published in JOSS (2024)

IMPPY3D — Peer-reviewed • Rank 8.7 • Science 98%

IMPPY3D: Image Processing in Python for 3D Image Stacks - Published in JOSS (2025)

Simmate — Peer-reviewed • Rank 11.6 • Science 95%

Simmate: a framework for materials science - Published in JOSS (2022)

CWInPy — Peer-reviewed • Rank 6.6 • Science 100%

CWInPy: A Python package for inference with continuous gravitational-wave signals from pulsars - Published in JOSS (2022)

TUM Open Infra Platform — Peer-reviewed • Rank 8.6 • Science 98%

TUM Open Infra Platform: an open source package for simultaneous viewing and analysis of digital models in the civil engineering domain - Published in JOSS (2022)

experDesign — Peer-reviewed • Rank 8.6 • Science 98%

experDesign: stratifying samples into batches with minimal bias - Published in JOSS (2021)

Adamantine 1.0 — Peer-reviewed • Rank 6.6 • Science 100%

Adamantine 1.0: A Thermomechanical Simulator for Additive Manufacturing - Published in JOSS (2024)

Ecological Metadata as Linked Data — Peer-reviewed • Rank 11.6 • Science 95%

Ecological Metadata as Linked Data - Published in JOSS (2019)

TauFactor 2 — Peer-reviewed • Rank 11.6 • Science 95%

TauFactor 2: A GPU accelerated python tool for microstructural analysis - Published in JOSS (2023)

lenstronomy II — Peer-reviewed • Rank 6.6 • Science 100%

lenstronomy II: A gravitational lensing software ecosystem - Published in JOSS (2021)

harmonize-wq — Peer-reviewed • Rank 8.6 • Science 98%

harmonize-wq: Standardize, clean and wrangle Water Quality Portal data into more analytic-ready formats - Published in JOSS (2024)

MorphoPy — Peer-reviewed • Rank 11.6 • Science 95%

MorphoPy: A python package for feature extraction of neural morphologies. - Published in JOSS (2020)